Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq1412 84.2 8e-12 seq6260 82.4 3e-11 seq2461 80.6 9e-11 >seq1412 Length=10105 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27080 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27138 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 1636 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 1578 >seq6260 Length=2033 Score = 82.4 bits (90), Expect = 3e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 45569 CGCCCCGACAAGCGTCCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGAC 45628 || ||| ||||||| || || | ||| |||| ||||||||||| || ||||| ||| Sbjct 1637 CGGCCCAACAAGCGCCCTGTGAACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAGGAC 1578 Query 45629 GCCGACATCGTCATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGACAGGAAG 45688 || |||||| |||||||||| || || || || ||||| |||| ||| || ||| Sbjct 1577 GCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAGTACAAG 1518 Query 45689 GGTATCGGCGAAATCCTGATCCGGAAGAACCGGGACGGAGAGATCGGCAGCGT 45741 || | | ||| | | || | ||| ||||| |||| || | ||| | ||| Sbjct 1517 GGGGTTGCCGAGTTGATCCTCGGCAAGCACCGGAACGGTGAAACCGGTACCGT 1465 >seq2461 Length=11543 Score = 80.6 bits (88), Expect = 9e-11 Identities = 146/214 (68%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 45524 TGTCCTGTGCTTCCCCTCTGCCAGCTCAACCGAGGTTGCGAGTCTCGCCCCGACAAGCGT 45583 || || ||| || |||| | |||||||||||| | ||| || || |||| || Sbjct 8675 TGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGC 8734 Query 45584 CCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGACGCCGACATCGTCATG 45643 ||| || | |||| |||| || ||||| || || ||||| || || ||| | ||||| Sbjct 8735 CCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATG 8794 Query 45644 TTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGACAGGAAGGGTATCGGCGAAATC 45703 ||||| ||||| || || || ||| |||| | | ||| || || |||| |||||| Sbjct 8795 TTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATC 8854 Query 45704 CTGATCCGGAAGAACCGGGACGGAGAGATCGGCA 45737 | ||| | || | || |||| ||||||| Sbjct 8855 ATTATCGGTAAACAGCGTAACGGGCCAATCGGCA 8888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172739251887768