Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq54 230 3e-55 seq222 187 3e-42 seq3596 149 7e-31 seq202 82.4 9e-11 >seq54 Length=99412 Score = 230 bits (254), Expect = 3e-55 Identities = 589/887 (66%), Gaps = 15/887 (2%) Strand=Plus/Minus Query 36884 TTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATT 36943 |||||| ||||| || || ||| |||| || ||||| || || |||| ||| || || | Sbjct 88915 TTTTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGTAGGGAGATCAT 88856 Query 36944 TTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAG 37003 |||||||| || |||||||| | || |||| || ||| |||||| | Sbjct 88855 CTCCATAAAGTCGAATGGATTGGTCACGTTGTATACCTTAGAACACCCTAATTCAAGTAA 88796 Query 37004 AAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAG 37063 | || ||| || ||||| || ||||| | ||| | || || || ||||| || Sbjct 88795 TAACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTCATGCCAATGAG 88736 Query 37064 TTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTAT 37123 || || || | |||||| | |||| | ||| ||| ||| ||||| ||| || Sbjct 88735 CTTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCATCGGTAA-TA- 88678 Query 37124 ATTAACAATAAC--TTCTTCAGTTGGGGGATATTTTAAATATTT---AAACAATAAACAT 37178 ||| || | ||||| | | ||| |||||| | || | |||||| || Sbjct 88677 ATTTCTTTTACCCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATACAATAGGCAA 88618 Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238 ||||| |||||||| || ||||| || ||| || | ||| || || ||| | | || Sbjct 88617 GCAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAGCTAAGACCG 88558 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGAAAAT 37297 |||||||| || |||||||| | ||| || || | ||||||| | ||||| |||||||| Sbjct 88557 GGCATTAATCCCCTTTTTTTGAGCCAGAAGATCGA-GCAAAAGCTACCAGAGAAGAAAAT 88499 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357 ||||| || |||||||| || | || | | | | ||| | | || | || || Sbjct 88498 GCCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAAACTCG--CT-TGGTCT---AT 88445 Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA 37417 ||| | | ||| ||||| ||| |||||||| || | || || || || || || Sbjct 88444 CCAACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGATGGCATTGAA 88385 Query 37418 GAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTC 37477 || ||| |||||| | ||| | || || |||||||| || | ||| |||| Sbjct 88384 AAGGCGATTTCTTTCTTGAGGATCCTTAATGTAGGTATCAATGAGGAGTGAATAGGTTTC 88325 Query 37478 AGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTG 37537 || || ||||| || | ||| ||||| || |||||||| | | || || | | || Sbjct 88324 TGAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGCCTCTGTATACTG 88265 Query 37538 AACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAA 37597 || || | ||| | | ||||| ||||||||||| || || |||||||||||||| Sbjct 88264 TACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTCACTAGCTGCAAA 88205 Query 37598 GAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATT 37657 |||||| | || | ||||| |||| |||||| || || ||| || || Sbjct 88204 GAAAGCCAATACGTGAGAGATAAAGTGTCGTTCATCGTTATTCAAGCGGGCCCAGTCTTT 88145 Query 37658 AATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATA 37717 | |||| ||| |||| || ||| |||||||||| || || ||| ||||| Sbjct 88144 GAGGTCTTGACTTAAGTCAATCTCCTCAGCGGTCCAAAAGCTAGCTTCTGCTTTCTTATA 88085 Query 37718 CATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTAT 37764 | |||| ||||||| ||||| || || |||| |||||||| || Sbjct 88084 AAAGTTCCATATATCATGATGTTCGATAGGGAATAATACAAATCGAT 88038 >seq222 Length=228455 Score = 187 bits (206), Expect = 3e-42 Identities = 407/602 (68%), Gaps = 13/602 (2%) Strand=Plus/Plus Query 36874 TAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTA 36933 |||| || ||||||||||||| | ||| | |||||| | ||||| |||| || | Sbjct 134771 TAACACCACTTTTTTGATATTCAGCGACTTTACCTTCGAATACATTTGATTTTCTTTGAA 134830 Query 36934 GTGATATATTTTCCATAAAATCAAATGGATTAGATGTATT--ATATATAGTACTACATGA 36991 | || || ||||||| |||| |||||||||| | ||| | || | | || | Sbjct 134831 GGGAAATCATTTCCATCCAATCGAATGGATTAGCGGCATTCCAGATCTTTTTGTAACCCA 134890 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 | | || || | ||| ||| |||||| ||||||| | |||| | ||| Sbjct 134891 AAGTGACTAATAAA--CGATCGGCACAAAATTCAATGTATTGAGACATGGCTCTGCTGTT 134948 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAG 37110 |||||||| || | |||||||| |||||| ||| ||| | || | | | ||| | Sbjct 134949 CATACCAATGAGATCTACTGGAAGAGCATCTGTGATGAATTCCTTCT-CACTGGCTACGG 135007 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAA--A 37168 |||| || || | | || |||| || | | | |||| | || | | Sbjct 135008 CATCACGAATGATTGTTTCGATGACTTTGGCA--TCGAGTTTATTCACCAATTTCGAGTA 135065 Query 37169 CAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 | |||||| ||||||| |||||||||||||||||| | ||| || | |||||| ||||| Sbjct 135066 GAGTAAACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAA 135125 Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGA 37288 || ||||||||||| || ||||| ||||| | ||| || || | |||| ||| Sbjct 135126 AGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTGCCACT 135185 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 |||||| |||||||| || |||||||| ||||| | |||| | | ||| || | | Sbjct 135186 AAAGAATATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAAA---GATTTTGA 135242 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 || | ||||||| | || |||||| || || || |||||| |||||||||||| Sbjct 135243 ATTTGTAATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTTTCAAT 135302 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 || || || || ||||||| || || | | ||||| ||||| |||| |||||| Sbjct 135303 AGCATTAAATAGTCTAGTTTTTTCATCTGGATTTTTAATATATGTATCGATTAATAAACT 135362 Query 37469 AT 37470 || Sbjct 135363 AT 135364 Score = 178 bits (196), Expect = 2e-39 Identities = 221/302 (73%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 ||||| | || || |||||||||||||| || || ||||||||||| ||||| | |||| Sbjct 135451 CTATAAGTCTCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCT 135510 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 || | | |||||| || | | || | | ||||| ||||||||||| || || ||| Sbjct 135511 TCTGGAATTTGAACTTCACTCATGAATTTGGTGGCTAAATTTTCATTAACGATACCGTCA 135570 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTT 37646 || |||||||||||||| ||||||| |||||||||||||||| || |||||| Sbjct 135571 CTGGCTGCAAAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATCGTTTAATTTA 135630 Query 37647 TT---CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCC 37703 || |||||||| ||||| |||| | ||| | ||| || | |||||||| || Sbjct 135631 TTCTCCCAATCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAAGCT 135690 Query 37704 AATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTA 37763 ||| || || | |||||||||| ||| || ||||| |||| |||||||||| Sbjct 135691 TCAGCATTCTTGTAATATGCCCAAATATCACTATATTTAATTGGGAATAATACAAATCTA 135750 Query 37764 TC 37765 || Sbjct 135751 TC 135752 >seq3596 Length=2072 Score = 149 bits (164), Expect = 7e-31 Identities = 351/528 (66%), Gaps = 8/528 (2%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| |||||||| | || |||||||| ||||| |||||| |||||||| Sbjct 37 CAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGC 96 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA-AAGAA 37294 |||||||| | ||||||||||| | ||| || || | || ||| ||| | ||||| Sbjct 97 CCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAA 155 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||| ||||| ||||| || || || || | |||| | ||| || | | | Sbjct 156 AATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA----- 210 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 ||||| || ||| ||||| ||| || ||||| || || || | || | Sbjct 211 -ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATG 269 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || || || |||||||||| |||| | ||||| ||||| || || | ||| | Sbjct 270 GAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGT 329 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 ||||||||| || ||||| || ||||| || ||||||||||| | ||||| | | Sbjct 330 TTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAG 389 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 || || ||| | | || || || | ||||||||| || || || ||||| || || Sbjct 390 CTGTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGC 449 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATC 37654 ||| |||||||| | || || ||||| | || | | ||| || | ||| | Sbjct 450 AAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTG 509 Query 37655 ATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGC 37702 || || | || | |||| ||| ||| ||||||| |||||||| Sbjct 510 CTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGC 557 >seq202 Length=37231 Score = 82.4 bits (90), Expect = 9e-11 Identities = 164/238 (69%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 78294 GCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAAACA 78353 || ||| |||||||| |||| ||| | || ||||| |||| |||| ||||||||| || Sbjct 3624 GCTAATCAAGGAAAAGTTGTAATTATATCAGCATTGGATGGAACATTCCAAAGAAAACCA 3565 Query 78354 TTTGGTAAT--ATTCTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGCTA 78411 | || || || | | || ||| | | ||||| | | | ||||||||||| Sbjct 3564 T--GGCCATCAATGATCGAATTGATTTCGAAAGCTGAAGATATTACGAAATTAAATGCCG 3507 Query 78412 TATGTAAAATATGTTTTAATGATGCTGCATTTACAAAAAGATTAT-GT----GACGATAC 78466 | |||| | |||| | | |||| |||||| | ||| | ||| || || || || Sbjct 3506 TCTGTATGGTCTGTTATCAAGATGGTGCATTCTCTAAACG--TATCGTTCCAGATGACAC 3449 Query 78467 TAAAATTGAACTAATTGGTGGAGAGGATAAATATAGTTCTGTTTGTAGAAAATGTTAT 78524 | ||||| |||||||||| |||||||||| || ||||||||||| || ||| Sbjct 3448 TG---TTGAATTAATTGGTGGTTCTGATAAATATATATCAGTTTGTAGAAATTGCTAT 3394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592259241614960