Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_017674.1 Length=66275 Score E Sequences producing significant alignments: (Bits) Value seq1548 98.7 4e-16 >seq1548 Length=720 Score = 98.7 bits (108), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 9/190 (5%) Strand=Plus/Minus Query 5474 CCAACCAGTACCAGAGACTCGAAATCGAATCTATGATCGTGGATGGCCGAGTGATTGAAG 5533 || |||| ||| | ||| ||| | ||| | ||||||||||| || ||| | ||| Sbjct 383 CCCACCAAGACCCGCGACATGAAGTTGAAGCGGTGATCGTGGATCGCGGAGCTTTCAAAG 324 Query 5534 CAAAGCCGGCGCGGCAACTCCGGGTGCCAAACATGGAGGCGC------CCTGCCGGGAGC 5587 || |||||||| ||||| |||||||| ||||| |||||| ||| || ||| Sbjct 323 CAGGCGCGGCGCGGTAACTCAGGGTGCCAGACATGCAGGCGCTGGTTGCCTTCC---AGC 267 Query 5588 TGGACTTGAATGAACCCCAGGCCGTGCAGCGTGATCTTGTCCTTCATCGGGTCATGGACG 5647 ||||| || | || |||||||||||||| ||||||||||| |||| ||| | | | Sbjct 266 TGGACCTGCACAAAGCCCAGGCCGTGCAGGGTGATCTTGTCGGTCATTACGTCGTCTATG 207 Query 5648 GTGCTCATGG 5657 |||||| || Sbjct 206 ATGCTCACGG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 211935118172104