Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq386 102 7e-17 >seq386 Length=121086 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29883 |||| || || || ||||| ||||| || || || ||||| | || || ||||| || Sbjct 3189 TAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCTGCAGACCCGTGACCTGC 3248 Query 29884 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 29943 |||| |||| || || || | ||| ||||| || || || || ||||| || Sbjct 3249 GCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATA 3308 Query 29944 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30003 || | || | |||||||||||| || || |||| ||||||| |||||| ||||| || Sbjct 3309 TCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAAC 3368 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCAT 30029 | | |||||| || || || ||||| Sbjct 3369 AGGCAGTGGCAGGGCGGCAGCGCCAT 3394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408578885270102