Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq701 197 2e-45 >seq701 Length=6676 Score = 197 bits (218), Expect = 2e-45 Identities = 296/411 (72%), Gaps = 17/411 (4%) Strand=Plus/Minus Query 22960 TAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCA 23019 ||||| |||||||||||||| || ||||| |||||||| || || || |||||| Sbjct 4136 TAGGACACTTCGCACTCTTCGTCGGATTCGAAGAACAGCATCTGCGCCACGCCTTCGTTG 4077 Query 23020 GCGTAGATCAGTGCCGG---GCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAGCGAGCC 23075 |||||||| |||||| || |||| |||| ||||| |||||||| || | || ||| Sbjct 4076 GCGTAGATTTTTGCCGGNNNGCAAGGTGGTGGTGTTGGAGAACTCCAGGGTGA-CGTGCC 4018 Query 23076 TTTCC-ATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCG 23134 |||| |||| || ||||||||||| ||||| |||||||||||||| ||||| || || Sbjct 4017 CTTCCCATTCCGGCTCCAGCGGCGTCACGTTGACGATGATGCCGCAGCGCGCGTAGGTGC 3958 Query 23135 ATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTG 23194 |||||| ||||||||| | || | |||||| || |||| ||| ||| | Sbjct 3957 TTTTGCCCAGGCAGATAGTCAGGACATTACGCGGGATACGGAAGAATTCGACGGTGCGCG 3898 Query 23195 CCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCTTCGTA 23253 |||| || || ||| ||||| ||||| ||| | | | | ||| ||| ||| Sbjct 3897 CCAGGGCAAAGGAGTTTGGCGGGATGATGCAGACGTCG--CTCTTG--ACG----TCG-- 3848 Query 23254 ACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAA 23313 ||||| | | |||| ||| || || |||||||| || || | ||||||||| Sbjct 3847 ACGAAGCTTTTTTCGTCGAAGTTTTTCGGATCGACGGTTGCCGAGTTGATGTTGGTGAAC 3788 Query 23314 ACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCG 23364 |||||||| || | |||| || | |||||||||||||||||||| ||| Sbjct 3787 ACCTTGAACTCATCGGCGCAGCGTACGTCGTAGCCGTAGCTGGAAACCCCG 3737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897506376341920