Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq3563 167 7e-37 seq1500 147 7e-31 seq7157 145 2e-30 seq1617 132 2e-26 seq4209 118 3e-22 >seq3563 Length=1830 Score = 167 bits (184), Expect = 7e-37 Identities = 231/321 (72%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 25954 TGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTT 26013 |||||||| || | || |||||| |||||||||||||| |||| | |||||| ||| Sbjct 1408 TGCATGGTGCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTT 1349 Query 26014 TCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTAC 26073 ||||||| |||||||| ||| | || || ||||| ||||| |||||||| |||||| Sbjct 1348 TCCCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTAT 1289 Query 26074 TCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCT 26133 || || |||||||| || |||||||| |||| | || || |||||||| || || Sbjct 1288 TCACCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCG 1229 Query 26134 TTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCG 26193 ||| | |||||| ||||| ||| |||| ||| |||||| | | | ||||| Sbjct 1228 ACCTTCTGGCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTC 1169 Query 26194 ACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGT-TCCCCAGGTTACCGACAAG 26252 || ||| || || |||| ||| || | || ||||| | || || | ||||||| | Sbjct 1168 ACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGCCGCATG-TACCGACCAA 1110 Query 26253 GATTACTTTATTTACGCCGCG 26273 || ||||| || || || || Sbjct 1109 TATGACTTTGTTAACCCCACG 1089 >seq1500 Length=48209 Score = 147 bits (162), Expect = 7e-31 Identities = 228/326 (70%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 |||||||||||| || || || | |||||||||| ||| || | |||| Sbjct 46552 CATCTGCATGGTGCCCGTGGTCTTAACAAGAATTTCAGTGACGTAACGGGTGATACCGTT 46611 Query 26010 CTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAG 26069 | |||||| | ||||| ||||||||||| ||||| ||||| | || || ||| Sbjct 46612 ATCTTCCCAGCTACGGGTACGGAGTTGCCCCTCGATGTAGACCTGCGCGCCCTTGCGCAG 46671 Query 26070 GTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCAC 26129 || || || || | ||||| | |||||| |||||||| ||||| |||||||| ||| Sbjct 46672 ATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGCCATTCCGTCTG 46731 Query 26130 TTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTT 26189 || | | || || ||||| || || |||||||||||| || || || | ||| Sbjct 46732 CTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCCACCTGCAGGTT 46791 Query 26190 GGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGAC 26249 || |||||||| || || || |||||||||| || ||||| || ||||| ||||| Sbjct 46792 TGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCCCAGACGCCCGAC 46851 Query 26250 AAGGATTACTTTATTTACGCCGCGTG 26275 ||||| || || || | || |||| Sbjct 46852 GAGGATGACCTTGTTGATACCACGTG 46877 >seq7157 Length=721 Score = 145 bits (160), Expect = 2e-30 Identities = 215/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 25971 GTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTT 26030 || ||| || || || ||||||||||| | || ||||| |||||||||| |||||| Sbjct 88 GTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCCCACTCGCGGGTGCG 147 Query 26031 CAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGC 26090 || || || | ||| ||| ||||| ||| ||||| |||||||| || || Sbjct 148 GAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATACTCACCCGCGATTTCGGC 207 Query 26091 TACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTG 26150 | |||||| || | ||| ||||| ||||| || || || | || | ||||||||| Sbjct 208 GATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTG 267 Query 26151 CTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGG 26210 |||||| ||||||||||| ||| || | ||| ||||| | || ||| ||| || || Sbjct 268 CTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGG 327 Query 26211 CATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCC 26270 |||| |||| || || ||| || ||| ||||| || || ||||| || ||||| Sbjct 328 GGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAATCACTTTGTTGACGCC 387 Query 26271 GCGTG 26275 |||| Sbjct 388 TCGTG 392 >seq1617 Length=5386 Score = 132 bits (146), Expect = 2e-26 Identities = 231/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 |||||||||||| || || || | |||||| ||| ||| || | |||| Sbjct 4657 CATCTGCATGGTGCCTGTGGTCTTAACAAGAATTTCGGTGACGTAACGGGTGATACCGTT 4716 Query 26010 CTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAG 26069 | |||||| | ||||| || || || || ||||| ||||| | || || ||| Sbjct 4717 ATCTTCCCAGCTACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAG 4776 Query 26070 GTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCAC 26129 || ||||| || | ||||| | |||||| |||||||| |||||||||||||||||| Sbjct 4777 ATATTCGCCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTG 4836 Query 26130 TTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTT 26189 || | | || || ||||| || || |||| |||| || || || || | ||| Sbjct 4837 CTCCCGCATCTCCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGACCTGCAGGTT 4896 Query 26190 GGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGAC 26249 || |||||||| || || || |||||||||| || ||||| || |||||| || || Sbjct 4897 TGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCCCAGGCGTCCTAC 4956 Query 26250 AAGGATTACTTTATTTACGCCGCGTGATGCCATTAT 26285 || || || || || | ||| || |||||| || Sbjct 4957 GAGAATGACCTTGTTAATGCCACGAACTGCCATGAT 4992 >seq4209 Length=1822 Score = 118 bits (130), Expect = 3e-22 Identities = 215/309 (70%), Gaps = 12/309 (4%) Strand=Plus/Plus Query 25971 GTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTT 26030 || ||| | |||||| |||||||| || | | ||||| |||||||||| || |||| Sbjct 357 GTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTTTTTCCCACTCTCGTGTTTG 416 Query 26031 CAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGC 26090 || | || || ||||| ||||| || |||||| ||| ||||| || ||||| || || Sbjct 417 AAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGC 476 Query 26091 TACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTC---TTTCTTTTCGCCGGT 26147 || || ||||||| || || |||||||| ||| ||| ||||| | || || Sbjct 477 GACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGT---CCCGT 533 Query 26148 CTGCTTATCGTTCCA--GCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCA 26205 ||||| || |||| ||| || || || | | | | |||| ||||| || Sbjct 534 TTGCTTGTCAGTCCACTGCTCACTT--GTTGCAAGGCTGAGATTGGTTACTGCATTACCG 591 Query 26206 TTAGGCATGTAACGGATCTCTGGATCGTTCCC-CAGGTTACCGACAAGGATTACTTTATT 26264 || || | ||| || | |||||||| | || ||||| || || | ||| |||||||| Sbjct 592 TTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTG-CCAACCAAGATCACTTTATT 650 Query 26265 TACGCCGCG 26273 ||||||||| Sbjct 651 TACGCCGCG 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159802846238484