Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq2461 120 6e-23 seq3418 89.7 1e-13 seq2455 87.8 4e-13 >seq2461 Length=11543 Score = 120 bits (132), Expect = 6e-23 Identities = 207/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 25059 AAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGT 25118 ||| || |||| || ||||| || || || || | || | || ||||| |||||| | Sbjct 8651 AAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCT 8710 Query 25119 CTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATA 25178 ||||| | | | | | || ||||| || ||||| |||||||| || || || ||||| Sbjct 8711 CTTGAGCAGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATC 8770 Query 25179 GAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGC 25238 || ||||||||||| | ||| || ||||||| ||||| |||||| |||| || | | Sbjct 8771 GAGCAGGATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACC 8830 Query 25239 TCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGGCGAGCTAGGCACA 25298 | |||||||| || || || || || || ||||| | || || | ||||| Sbjct 8831 GAGCATAAAGGCATCGCTGAAATCATTATCGGTAAACAGCGTAACGGGCCAATCGGCACC 8890 Query 25299 GTGAGAGCGGCATTCATTGGGCAGTACACGCGATTTGAAAACCTATCACCAGAGAGCTAT 25358 | | ||| ||||| || | ||||| || || || ||||| | || | |||||| Sbjct 8891 ACGCGCCTGGCCTTCATCGGTAAATACACCCGCTTCGAGAACCTGGCGCCGGGCAGCTAT 8950 Query 25359 A 25359 | Sbjct 8951 A 8951 >seq3418 Length=564 Score = 89.7 bits (98), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 25068 GCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAAAC 25127 ||||| ||| | | ||||| | || || | ||||||||||||||| || || ||| Sbjct 265 GCGAAGGAAATGCAGTGTCCGGTAATTGCCCTGTCACAGCTTAACCGATCGCTGGAGAAC 324 Query 25128 AGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGAT 25187 | | | |||| || || | | || |||||||| || || || ||||| || |||||| Sbjct 325 CGTCCGAATAAACGTCCGGTGATGTCCGACTTGCGTGAATCCGGTGCGATCGAGCAGGAT 384 Query 25188 GCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAA 25247 || || | ||| || || ||||| || || || |||||| || ||| | || Sbjct 385 GCCGACTTGATCATGTTTATTTACCGGGATGAGGTTTATAACAAGGA---ATCTAAAGAA 441 Query 25248 ---GGCATTGCCGAGATTATCATTGGCAAACACAGGAATGG 25285 |||| |||||| ||||| || |||||||| | ||||| Sbjct 442 GCTGGCACTGCCGAAATTATTATCGGCAAACAGCGTAATGG 482 >seq2455 Length=6332 Score = 87.8 bits (96), Expect = 4e-13 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 25068 GCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAA-A 25126 |||||||| | ||||| || || | ||| | || ||||| ||||||| || || | Sbjct 4535 GCGAAAGAGATGAATTGCCCGGTGGTTGCGCTTTCCCAGCTCAACCGAGAACTGGAGCGA 4594 Query 25127 CAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGA 25186 | | || ||||||| || || ||| ||||| |||| || || ||||| |||||||| Sbjct 4595 CGGCCAA-ATAAGCGTCCGATCAACGCAGACCTGCGTGATAGCGGTGCGATTGAACAGGA 4653 Query 25187 TGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAA 25246 || || || || || | ||||| ||||| ||||| |||| | ||| |||| Sbjct 4654 CGCGGACCTGATTATGTTCGTCTACCGGGACGAGGTGTACCACCCTCAGAGCGAACACAA 4713 Query 25247 AGGCATTGCCGAGATTATCATTGGCAA 25273 ||||||||| || || || | ||||| Sbjct 4714 AGGCATTGCAGAAATCATTCTCGGCAA 4740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101520227168064