Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq3699 590 2e-164 seq1335 105 2e-18 seq915 91.5 4e-14 >seq3699 Length=658 Score = 590 bits (654), Expect = 2e-164 Identities = 359/380 (94%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 37407 CATACAAAGATATTGTTGGTGTATGGACTGTATGCCACGGACACACCGGAAAAGACATCA 37466 |||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||| Sbjct 1 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 60 Query 37467 TGCTCGGTAAAACGTATACCGAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 37526 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 120 Query 37527 CGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATATACCGGAAACAACGCGCGGCG 37586 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 121 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 180 Query 37587 CTCTTTACTCGTTCGTCTATAACGTGGGCACAGGCAATTTCAGAACATCGACGCTTCTTC 37646 |||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||| Sbjct 181 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 240 Query 37647 GCAAAATAAACCAGGGCGATATCAAGGGCGCATGTGATCAGCTACGGCGCTGGACATACG 37706 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | Sbjct 241 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 300 Query 37707 CTGGCGGTAAGCAATGGAAAGGGCTGATGACCCGTCGTGAGATTGAGCGTGAAGTCTGTT 37766 |||||||||||||||||||||| || ||||| ||||||||||||||||||||| |||||| Sbjct 301 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 360 Query 37767 TGTGGGGGCAACAATGAGCA 37786 ||||||| || |||||| || Sbjct 361 TGTGGGGTCAGCAATGAACA 380 Score = 176 bits (194), Expect = 1e-39 Identities = 195/261 (75%), Gaps = 23/261 (9%) Strand=Plus/Plus Query 37882 TAACCGCGATTATCTCCGCTCTGATTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTA 37941 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 384 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTA 443 Query 37942 ATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAA---GCCACA---- 37994 |||||||||||||||||||||| ||||||||| |||||||| ||| |||| | Sbjct 444 ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAAC 503 Query 37995 --------------TCCACAATCGCTGACATGCAGAAGCGTCAACGTGACGTAGCAAAAC 38040 | |||| |||||||||||| ||| || ||||| || || || Sbjct 504 TGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCAC 563 Query 38041 TCGACGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGAAAGTCTCCGT 38099 | || | | ||| || |||||| | ||| |||| || || || || || ||| ||| Sbjct 564 TGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GATGCTCTGCGT 622 Query 38100 GCTGATGTTTCTGCTGGTCGT 38120 | || |||| | ||||||||| Sbjct 623 GATGGTGTTGCCGCTGGTCGT 643 >seq1335 Length=14169 Score = 105 bits (116), Expect = 2e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 30569 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 30628 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 4080 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 4021 Query 30629 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 30688 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 4020 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 3961 Query 30689 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 30748 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 3960 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 3901 Query 30749 CACTGGCATGGCACCAACCAAATGTTCTACCGCCAAAAACG 30789 || || || || | ||| |||||| | || |||| || Sbjct 3900 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 3860 Score = 105 bits (116), Expect = 2e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 22060 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTGCGAG 22119 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11219 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11160 Query 22120 GATTGTTATTCAGTGCCGATATTTACCTTT 22149 || || | |||| ||| | ||| || ||| Sbjct 11159 GA-TGCTGTTCATTGCTGCTATACACTTTT 11131 >seq915 Length=38681 Score = 91.5 bits (100), Expect = 4e-14 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 24939 TCTTTGGTTTCCAGCTCATCCAGCAGCGCCAGCATGGTGGCGTGGTTGGCTGCGGCGATA 24998 ||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||| Sbjct 9480 TCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTGGCGGGTTTGGCTGCGGCGATA 9421 Query 24999 AAT 25001 || Sbjct 9420 TAT 9418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127172258850060