Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq3699 845 0.0 seq3178 226 9e-55 seq1335 105 2e-18 >seq3699 Length=658 Score = 845 bits (936), Expect = 0.0 Identities = 560/621 (90%), Gaps = 0/621 (0%) Strand=Plus/Plus Query 46381 CATATAAGGACGTAGTTGGTGTGTTGACTGTGTGTTATGGCCACACCGGAAAAGACATCA 46440 |||| || || | |||||||| | |||||| ||| | || || || ||||||||||||| Sbjct 1 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 60 Query 46441 TGCCTGGTAAAACGTATACCGAAGCAGAATGCAAATCCCTCCTGAATAAAGACCTTGTCA 46500 ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| || Sbjct 61 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 120 Query 46501 CTGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATATACCGGAAACAACGCGAGGCG 46560 | |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct 121 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 180 Query 46561 CCCTTTACTCGTTCGTCTACAACGTGGGCGCAGGTAATTTCAGAACATCGACGCTTCTTC 46620 | |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| Sbjct 181 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 240 Query 46621 GCAAAATAAATCAGGGTGATATCAAAGGCGCATGTGACCAGCTACGTCGCTGGACATACG 46680 |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 241 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 300 Query 46681 CTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTGAGATTGAGTGTGAAGTCTGTT 46740 |||||||||||||||||||||| || |||||||| |||||||||||| ||||| |||||| Sbjct 301 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 360 Query 46741 TGTGGGGGCAGCAATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 46800 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 420 Query 46801 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCA 46860 ||||||||||||||||||||||||||||||||||||||| || || ||||||||| || Sbjct 421 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCA 480 Query 46861 GCGCGATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCA 46920 |||||| ||||| | ||| |||||||||| ||||| ||| | ||||||||||||||| Sbjct 481 GCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGAT 540 Query 46921 GCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAA 46980 |||||||||||||| || |||||| |||| ||||||||||||||||||||| ||||||| Sbjct 541 GCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAA 600 Query 46981 AGCTGAAAATGATGCTCTTCG 47001 |||||||||||||||||| || Sbjct 601 AGCTGAAAATGATGCTCTGCG 621 >seq3178 Length=10189 Score = 226 bits (250), Expect = 9e-55 Identities = 352/497 (71%), Gaps = 11/497 (2%) Strand=Plus/Plus Query 48522 GGCTGATACCTGCGAGCGAAGTCAGTGAGTGGGT--AAGCCGCCAAATCCTCAGCGATAC 48579 |||| | |||||| |||||| | || ||| | |||||| | |||||| ||| || Sbjct 674 GGCTCACGCCTGCGCCCGAAGTGTGGGAATGGCTCCAAGCCG--AGATCCTCGCCGACAC 731 Query 48580 CGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGACCTCTGCTTCATGTG 48639 ||||| ||| || ||| ||||| | ||||| | || || ||| || | ||||||| Sbjct 732 CGGCACCATTCACAACGAAGACCATGCCCACCTACTGGATGCAGACATCCGGATCATGTG 791 Query 48640 GGCGTC--CGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCCAAGCCGAGCAGGTA 48697 |||||| ||| ||||| ||| | || || ||| | ||||| |||||||| ||| Sbjct 792 GGCGTCGTCGA--GCTTCGCCAAGCAGGGTCGCACAGTCTTGGGCCAGGCCGAGCAAGTA 849 Query 48698 ATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATGTATGAATGGTTC 48757 | | |||||||| |||||||||||||||| ||||| || |||||| ||| |||||| Sbjct 850 GCGTTTCGCGCCGGCGGTTGGCAGAAAGCCATGATGGAGCAACAGATGCGTGATTGGTTC 909 Query 48758 GGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACAATGCAATGAC 48817 || | ||| |||||||| || ||||| ||||| |||||| | || |||| ||| Sbjct 910 GGCGATGTGCCGGCATTCATCATTACCCTGGCTGCCGACTACTGCGCCCAGTGCAGCGAC 969 Query 48818 CTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCCACCGATGAT 48877 || ||||||||||| || | ||||| |||||||| ||| | || || || ||||| | Sbjct 970 CTTGAGTTCTGCGCCTTGATCGAGCACGAGCTTTATCACCTGGCTCACGCGACCGACAAG 1029 Query 48878 TTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTGCTTACACTGCGCGGCCAC 48937 | ||| || |||| | | |||| | ||| || | | | |||| |||||| Sbjct 1030 TACGGTCAACCAGCATTCACCCA--AGACGGTGCA-CCGAAGATCAAGCTGCAGGGCCAC 1086 Query 48938 GACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCCAGCAAAGAAGTACAGGAG 48997 ||||| ||||| ||| | |||||||| || || || ||||| ||| || || || | | Sbjct 1087 GACGTGGAAGAGTTCGTCGGTGTCGTCCGCCGCTATGGTGCAAGCCCTGACGTTCAAGCG 1146 Query 48998 CTTGTTGATGCGGCCAA 49014 | || ||||| || || Sbjct 1147 TTGGTGGATGCTGCAAA 1163 >seq1335 Length=14169 Score = 105 bits (116), Expect = 2e-18 Identities = 72/79 (91%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 27830 ATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGCGCG 27889 ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 11221 ATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCG 11162 Query 27890 AGGAT--TGTT-ATTGCTG 27905 ||||| |||| ||||||| Sbjct 11161 AGGATGCTGTTCATTGCTG 11143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157035101769864