Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq654 96.9 1e-15 >seq654 Length=148201 Score = 96.9 bits (106), Expect = 1e-15 Identities = 178/259 (69%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 4999 AGGCCGCGCTGCTCGTGGTGGATGAGTATTCCATGATTGACGAGCAGATGGGGGAGGACT 5058 ||||| |||| |||| || || |||| || ||| | ||||| ||| | || || Sbjct 11383 AGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGATC 11442 Query 5059 TGCTCAGCTTCGGTTGCCCGATCCTCGCCCTGGGCGATCCCGGACAGCTCCCGCCCGTGG 5118 | | |||||||| ||| || || | |||||||| || || ||||| |||||| | Sbjct 11443 TCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATAT 11502 Query 5119 GCGGCACCCCCTTCTTCAA-GAACA--AGCCCGACATCCTGCTCACGGAGATTCACCGCC 5175 |||| | |||||||| ||||| |||| || ||||||||| || || ||||| | Sbjct 11503 CCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCCTGCTCAGCGAAATCCACCGGC 11562 Query 5176 AGGCCCAGGACAACCCGATCATCTGGATGTCCAAGGAGGTCCGCGAGGGCCGCGTGCTCC 5235 |||| | |||||||||||| | | || | || || |||||||| || | || Sbjct 11563 AGGCGCGCGACAACCCGATCCTGCGCCTGGCGCTCGACGTGCGCGAGGGACGTGAATTCG 11622 Query 5236 GCCCCGGCGACTACGGTGC 5254 || ||||| | |||||| Sbjct 11623 GCTATGGCGATTTCGGTGC 11641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195594741759852