Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq7157 156 2e-33 seq1500 105 3e-18 seq1617 84.2 9e-12 >seq7157 Length=721 Score = 156 bits (172), Expect = 2e-33 Identities = 217/301 (72%), Gaps = 5/301 (2%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 |||||||||||| || ||||||||||| ||||| |||||||||| ||||||| ||| Sbjct 385 CGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCC 326 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGC 10091 || |||| |||| | | ||||| ||| || || | ||| ||| || || ||| Sbjct 325 GAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCA 266 Query 10092 GAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGC 10151 || |||| || | |||| ||||| ||||||||||| ||||||||| |||| Sbjct 265 GACCGGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGC 206 Query 10152 CGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGT-CTACATCGAGGGCCGCATCC 10210 ||| |||| | ||||| ||||| || || | ||| || |||| |||| ||| ||| Sbjct 205 CGAAATCGCGGGTGAGTATCTGCGAAAAGG-GAGCCAGTGCTACGTCGAAGGCACTCTCC 147 Query 10211 GCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGATCGTCGCCG 10270 |||| || |||| ||| || | ||| | | |||||||| ||||||||||||| || Sbjct 146 GCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCGTCG 90 Query 10271 A 10271 | Sbjct 89 A 89 >seq1500 Length=48209 Score = 105 bits (116), Expect = 3e-18 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 9974 TCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGA 10033 ||||||| |||||||||||||| ||| ||| || |||||| ||| ||| |||| | Sbjct 46868 TCAACAAGGTCATCCTCGTCGGGCGTCTGGGCAATGATCCGGAAGTCCGTTACATCCCCA 46809 Query 10034 GCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCGA 10093 ||| | |||| | | ||| | | | || || | || ||| ||||| || Sbjct 46808 ACGGGGGCGCAGTGGCAAACCTGCAGGTGGCCACATCAGAAAGCTGGCGTGACAAACAGA 46749 Query 10094 GCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCCG 10153 || |||||| ||| ||| |||||||||||||| | |||||| ||||| | Sbjct 46748 CGGGGGAGATGCGGGAGCAGACGGAATGGCACCGCGTGGTGCTGTTCGGCAAGCTCGCGG 46689 Query 10154 AGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGCA 10213 | | | | || || |||||||||||||||| ||||||||||||||| | |||| | Sbjct 46688 AAGTGGCTGGTGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAGGGGCAACTCCGTA 46629 Query 10214 CGCGGAAGTGGCAGGATAACG 10234 | || | ||| | ||||||| Sbjct 46628 CCCGTAGCTGGGAAGATAACG 46608 >seq1617 Length=5386 Score = 84.2 bits (92), Expect = 9e-12 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 9976 AACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGAGC 10035 ||||| ||||| ||||| || || || || |||||| ||| ||| |||| | | Sbjct 4971 AACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCGGAAGTCCGTTACATCCCCAAC 4912 Query 10036 GGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCGAGC 10095 || | |||| | | ||| | | |||| ||| | || || ||||| || Sbjct 4911 GGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAAACCTGGCGTGACAAACAGACA 4852 Query 10096 GGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCCGAG 10155 || |||||| ||| ||| |||||||| ||||| | |||||| ||||| || Sbjct 4851 GGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTGCTGTTCGGCAAGCTCGCGGAA 4792 Query 10156 ATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGCACG 10215 | | | ||| || |||||||||||||||| |||||||||||| || | | ||||| Sbjct 4791 GTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAAGGTCAGCTTCGCACC 4732 Query 10216 CGGAAGTGGCAGGATAACG 10234 || | ||| | ||||||| Sbjct 4731 CGTAGCTGGGAAGATAACG 4713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197770540879692