Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq2008 107 5e-19 >seq2008 Length=9006 Score = 107 bits (118), Expect = 5e-19 Identities = 300/452 (66%), Gaps = 9/452 (2%) Strand=Plus/Plus Query 31311 AACCCCGTTGACGATCCGGCGCTGGACGTCTGCAACGGTACGCTGACGGCCTGCAAGCTG 31370 |||||| ||||| ||||| |||||| ||||| || ||| | |||||||| | Sbjct 3796 AACCCCACGGACGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTA 3855 Query 31371 CGATTTGGCGAGGCGCAGCCGCTCGACTTCGGCGGATTCCCCGGCACCAGTCTGAT---C 31427 || || |||||| | ||| ||||||||||||||||| | ||||| | Sbjct 3856 CGCTTCGGCGAGTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCC 3915 Query 31428 AGGAGCTAAACATGGACGAAACAC-TGATTCAGGAGATTAAGCGGCACGCGGC-GCAAAC 31485 |||||| | |||| | || ||| | ||| || ||| || ||| ||||| || | Sbjct 3916 CGGAGCTGACCATGCGC-AAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAG 3974 Query 31486 CTACCCGCAGGAGTGCTGCGGGCTTGTCATT-CTGCAGGACGGCCAGCCGCGTTATCTCC 31544 || ||| | |||||||||||||| | | ||| ||| ||| | || | || ||| Sbjct 3975 -TATCCGAAAGAGTGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGC-GCAGAAGTACTTCC 4032 Query 31545 CCTGCAGAAACACCGCAGACAACCCGGCGGCGCATTTTCGCATCGCGCCGGAGGATTACG 31604 | ||| | |||| ||| | ||| | | ||||| | | || ||||| |||| Sbjct 4033 CGTGCCGGAACATCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACG 4092 Query 31605 CCCGCGCCGAAGATCAGGGCGACGTGGTAGGCATCGTTCACAGCCACCCTGACGCCACCA 31664 | || || || | |||||| ||| | || || |||||| ||||| |||||||||| Sbjct 4093 CTGCAGCGGAGGACCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCA 4152 Query 31665 GCCAGCCGAGCGAGCTGGATAAGGCGCAGTGCGACGTTACAGAGCTGCCCTGGCATATCC 31724 ||| |||| || || ||| |||||| | || | |||||||||| || | Sbjct 4153 GCCGGCCGTCACCGCACGACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTC 4212 Query 31725 TGAGCTGGCCCGAGGGCGATTTACGCACCATC 31756 || ||||||||||| ||||| || || ||| Sbjct 4213 TGTCGTGGCCCGAGGGGGATTTGCGGACGATC 4244 Score = 91.5 bits (100), Expect = 4e-14 Identities = 228/344 (66%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 33582 CGCAGCTATACCGGCACCTGGGATGGCACGTTTAAATGGGCGTGGACGGATAACCCGGCC 33641 |||||||| | ||| ||||||||||| || || ||| ||||| || ||||| | | Sbjct 8139 CGCAGCTACTCTGGCGTTTGGGATGGCACATTCAAGGAGGCATGGACCGACAACCCTGTC 8198 Query 33642 TGGGTGTTTTACGACCTGGTGATCACTGATCGCTTCGGACTCGGCGACCGGCTGGACGCC 33701 ||| || | ||| | | || |||||||| |||||| || | | ||| Sbjct 8199 TGGCATACCTATGGCCTAACCACAAACGACCGCTTCGGCCTCGGCCGTCGCATCAA-GCC 8257 Query 33702 GATAACG-TGGACAAATGGGCGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCC 33760 | | | | ||||| |||| ||| |||| | |||| |||||||||||||||||||| Sbjct 8258 GTGGATGGTCGACAAGTGGGAGCTGTACCGCATTTCGCAGTACTGCGATCAGATGGTGCC 8317 Query 33761 GGACGGCAGGGGCGGCGACGGCAAAGAGCCACGCTATATGTGCAACGTCTACGTGCAGAG 33820 | |||| | ||| ||| | || || || | || ||| | | || ||||||| Sbjct 8318 GAACGGGAAGGG------TGGCCAGGAACCGCGTTTCATCTGCGATCTGAACTTGCAGAG 8371 Query 33821 CCGGGCCGACGCATTCACGGTTTTGCGCGACTTTGCGGCCATCTTCCGGGGCATGACTTA 33880 | ||| || |||| || | |||||||| | || | || | ||| |||||||| || Sbjct 8372 CAAGGCGGATGCATGGTCGCTGCTGCGCGACATCTCGACGATTTACCGAGGCATGACCTA 8431 Query 33881 CTGGGGTGGCGATCAGCTCGTTACGCTGGCAGACATGCCGCGCG 33924 |||| | || || | || ||| | || |||||||||| Sbjct 8432 TTGGGCCCAGGGCCAAGTCTTCACCCTGTCGGATATGCCGCGCG 8475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127783402426368