Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq322 161 8e-35 seq540 159 3e-34 seq982 138 9e-28 seq391 105 5e-18 seq339 96.9 3e-15 >seq322 Length=112280 Score = 161 bits (178), Expect = 8e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||||||||| | |||||||||||||||||||||||||| || ||||| || | | Sbjct 11231 CCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11172 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||| ||||| ||||| || | | ||||| ||||| || Sbjct 11171 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGG 11112 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| ||||| || ||| |||| | || ||||| ||| ||| Sbjct 11111 ATACCTTCTTTGTCTTGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAACT 11052 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | ||||| ||||| || || |||||||| || ||||| Sbjct 11051 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11005 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| || || ||||||||||| || ||||| |||| | ||| | |||| ||| Sbjct 11441 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCC 11382 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| ||||| || | | ||||||||||| || || |||||||| ||||| Sbjct 11381 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 11322 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| || |||| | |||||||| ||| ||||| | || | ||||| Sbjct 11321 ATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTTTTA 11262 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| || ||||| Sbjct 11261 CCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 138 bits (152), Expect = 9e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||| ||||| | | | |||||||| || || ||||||||||| || ||||| || Sbjct 12147 ATTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTC 12088 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | || || | |||| |||||||||||||| ||||| || | | ||||||||||| Sbjct 12087 AGAGAGGGTACGACCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGG 12028 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 || || ||||| |||||||| || || || ||| |||| | |||||||| ||| Sbjct 12027 TGGGATACCTTCCTTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTC 11968 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || | ||||| ||||| || || || ||||| || ||||| Sbjct 11967 AACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | | || ||||| || || ||||||||||| || ||||| || | | Sbjct 11915 CCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAG 11856 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||| ||||| ||||| || | | ||||||||||| || Sbjct 11855 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 11796 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| ||||| || || |||| | || ||||| ||| ||| Sbjct 11795 ATACCTTCTTTGTCTTGGATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTACT 11736 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||||| ||||| || || |||||||| || ||||| Sbjct 11735 TCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||||||||| || |||||||||||||| || ||||| || | || || | | || || Sbjct 11670 AACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCTTC 11611 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| ||||| ||||| || | | ||||| ||||| || || |||||||| ||||| Sbjct 11610 TAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 11551 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || |||||| | || | || ||||| ||| ||||| | || | ||||| Sbjct 11550 GATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGTTTT 11491 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || |||||||| || ||||| Sbjct 11490 ACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 >seq540 Length=89862 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 ||| || |||||||| | | ||| | ||| ||||| ||||||||||| || |||||||| Sbjct 84545 ATTACCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATC 84486 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | || || | |||| |||||||| ||||| ||||| || | | ||||||||||| Sbjct 84485 AGAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGG 84426 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 || || |||||||||||||| ||||| || ||| |||| | |||||||| ||| Sbjct 84425 TGGGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTC 84366 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | |||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 84365 AACTTCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | | || ||||| ||||| ||||| ||||| || || ||||| | | Sbjct 83857 CCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAG 83798 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||||||| ||||| ||||| || | | ||||| ||||| || Sbjct 83797 AGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGG 83738 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| ||||| || ||| |||| | |||||||| ||| ||| Sbjct 83737 ATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 83678 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||||| ||||||||||| |||||||| || ||||| Sbjct 83677 TCTAATGTGATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCAT 83631 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||||||||| ||||||||||| || || ||||| | || || | |||| ||| Sbjct 84067 ACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCC 84008 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| ||||| || | | ||||||||||| || || |||||||||||||| Sbjct 84007 AATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGG 83948 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || |||| | |||||||| || ||||| | |||| ||||| Sbjct 83947 ATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAATGTGATTGTTTTA 83888 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || ||||| ||||| || ||||| Sbjct 83887 CCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||||||||| || || ||||| ||||| || || ||||| | || || | | |||| || Sbjct 84296 AACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGGCCATCTTC 84237 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 |||||| ||||| ||||| || | | ||||| ||||| || || |||||||||||||| Sbjct 84236 CAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTG 84177 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| || ||| |||| | |||||||| ||| ||||| | |||| ||||| Sbjct 84176 GATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTT 84117 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| || ||||| Sbjct 84116 ACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 >seq982 Length=41121 Score = 138 bits (152), Expect = 9e-28 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| || || ||||||||||| || ||||| |||| | ||| | |||| || Sbjct 2614 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCT 2673 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || || | | |||||||| || || || |||||||| |||||| Sbjct 2674 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCTTTGTCTTGA 2733 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| |||| | |||||||| ||| ||||| | |||| ||||| Sbjct 2734 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATTGTTTTA 2793 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 ||||| || || |||||||| || |||||| ||| Sbjct 2794 CCGGTCAAGGTCTTTACAAAAATTTGCATGTTTA 2827 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| ||||| ||||| || ||||| |||| | ||| | |||| ||| Sbjct 2386 ACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAAAGTACGACCATCTTCC 2445 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || || | | ||||||||||| || || |||||||| ||||| Sbjct 2446 AATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 2505 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| |||| | |||||||| ||| ||||| | |||| ||||| Sbjct 2506 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATAGTTTTA 2565 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| || ||||| Sbjct 2566 CCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| ||||| | | | |||||||| || |||||||||||||| || |||||||| Sbjct 1909 TTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCA 1968 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | || || | |||| |||||||| ||||| || || || | | ||||||||||| Sbjct 1969 GAGAGGGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGT 2028 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || |||||||| ||||| || || || || |||| | ||||| || ||| Sbjct 2029 GGGATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCT 2088 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||| ||||| ||||| || || || ||||| || ||||| Sbjct 2089 ACCTCTAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 >seq391 Length=66319 Score = 105 bits (116), Expect = 5e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||||||||| ||||| ||||| ||||| || |||||||| | ||| | |||| || Sbjct 37227 AACTAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTTGTAAAGTACGACCATCTTC 37286 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| ||||| ||||| || | | ||||||||||| || || |||||||| ||||| Sbjct 37287 TAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCTTG 37346 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| || || |||| | ||||| || || ||||| ||||| | ||| || Sbjct 37347 GATTTTAGCCTTGACGTTTTCGATGGTGTCTGATCCCTCTACTTCGAGAGTAATCGTCTT 37406 Query 101440 GCC 101442 || Sbjct 37407 ACC 37409 >seq339 Length=35222 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| ||||| ||||| ||||| ||||| ||||| | ||| | | || ||| Sbjct 21142 ACTAAATGGAGGGTCGATTCCTTTTGGATATTATAATCTTGTAAAGTACGACCGTCTTCC 21083 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 ||||||||||| ||||| |||||||| ||||||||||| || || ||| Sbjct 21082 AATTGCTTACCAGCAAAAATCAAACGTTGTTGATCGGGGGGGATACCT 21035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396240854355318