Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq80 123 6e-23 seq2801 89.7 1e-12 >seq80 Length=65862 Score = 123 bits (136), Expect = 6e-23 Identities = 321/482 (67%), Gaps = 13/482 (3%) Strand=Plus/Plus Query 150311 GGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGATTCTT 150370 || ||| | |||||| ||||||| | || |||| || | | |||| || | Sbjct 18219 GGAAAATTGGATCCAGTAATTGGAAGAGATGATGAAATTCGTAGAGTTATTCGTGTTTTG 18278 Query 150371 TCTCGTAAAACCAAAAAGAATG--GTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACAC 150428 || |||| |||||| || ||| || | ||| |||||||||| ||||| ||||| || Sbjct 18279 TCACGTAGAACCAAGAATAATCCAGTAC-TTA-TTGGTGAACCTGGTGTGGGTAAGACGG 18336 Query 150429 AAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAG 150488 | ||||| ||||| ||||| | || | | ||| ||| |||||||| | |||| | Sbjct 18337 CTGTTGTTGAAGGATTGGCACAGAGAATTGTTCGTGGAGATATTCCAGATAATTTGAATG 18396 Query 150489 ATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTG 150548 | || ||| |||| ||||||||| || | ||| ||| | ||||||||||||| Sbjct 18397 CTCGTGTCATTGCAC--TTGA-TATGGGTGCTTTGATTGCCGGTGCCAAGTATCGTGGTG 18453 Query 150549 AATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATGATG---TTA 150605 | || ||||||||| | | | | || | || | ||||| ||| || | | Sbjct 18454 ATTTTGAAGAACGTTTGAAAGCTGTACTTAAGGAGGTCAAAGATTCAAATGGTGGCATCA 18513 Query 150606 TTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTT 150665 || |||| |||||||| |||||| || ||||||| || |||| | |||| || Sbjct 18514 TTTTGTTTATCGATGAGATCCATTTGGTTTTGGGTGCCGGCAAGACT---GACGGTGCTA 18570 Query 150666 TGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTG 150725 ||||| |||| |||| || || | | | |||||| | ||| || |||| Sbjct 18571 TGGATGCTGCCAATTTGTTGAAGCCAATGTTGGCCAGAGGTGAATTACGTTGTATTGGTG 18630 Query 150726 CAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTT 150785 | || || | ||||||||| | ||| | | ||||| ||| |||| | | ||||||| Sbjct 18631 CCACTACATTGGATGAATATAGAAAATATGTCGAAAAGGATCCAGCTTTTGAACGTCGTT 18690 Query 150786 TC 150787 || Sbjct 18691 TC 18692 >seq2801 Length=5589 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||||| | Sbjct 4204 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTCGATC 4263 Query 324575 CCGTTTAGCTCCACAAA 324591 |||||||||||||| || Sbjct 4264 CCGTTTAGCTCCACCAA 4280 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||||| | Sbjct 4485 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTCGATC 4544 Query 324575 CCGTTTAGCTCCACAAA 324591 |||||||||||||| || Sbjct 4545 CCGTTTAGCTCCACCAA 4561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147476094975452