Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq1335 682 0.0 seq915 363 6e-96 seq6381 324 5e-84 seq3699 206 1e-48 >seq1335 Length=14169 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Minus Query 10256 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 10315 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 9210 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 9151 Query 10316 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 10375 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 9150 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 9091 Query 10376 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 10435 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 9090 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 9031 Query 10436 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 10495 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 9030 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 8971 Query 10496 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10555 || ||||||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 8970 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 8911 Query 10556 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10615 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| | || Sbjct 8910 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 8851 Query 10616 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10675 || || | ||| | || | || | | |||| || || ||||| | ||| || | Sbjct 8850 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 8791 Query 10676 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10735 ||||| || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 8790 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 8731 Query 10736 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10795 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 8730 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 8671 Query 10796 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10855 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 8670 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 8611 Query 10856 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 10914 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 8610 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 8552 Query 10915 TAATTTCTGGTGTCATG 10931 |||| || ||||||||| Sbjct 8551 TAATGTCCGGTGTCATG 8535 >seq915 Length=38681 Score = 363 bits (402), Expect = 6e-96 Identities = 397/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 2962 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3021 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 1613 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 1672 Query 3022 GGGGAACATCGCCAAGAAGTTGCACAAGCTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3081 | || ||||||||||| | ||||| ||||| |||| || ||||||||||| |||| Sbjct 1673 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 1732 Query 3082 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3140 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 1733 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 1791 Query 3141 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3200 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 1792 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 1851 Query 3201 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3260 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 1852 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 1908 Query 3261 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3320 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 1909 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 1968 Query 3321 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3380 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 1969 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 2028 Query 3381 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3440 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 2029 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 2088 Query 3441 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3484 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 2089 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 2132 >seq6381 Length=773 Score = 324 bits (358), Expect = 5e-84 Identities = 240/279 (86%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 30425 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGTGCCGCCACAAATTTTGGCT 30484 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGCT 60 Query 30485 GCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCC 30544 ||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 61 GCATCAACAGTTTTCTCCTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCC 120 Query 30545 TTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTA 30604 ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 121 TTTGGTGTTACTGCTGTCGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTA 180 Query 30605 ATAAGCAGGGCCAGCGCAGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-T 30663 ||||||| ||||| || | || | | |||||||||||| | |||| | ||| | Sbjct 181 ATAAGCATTGCCAGAGCGGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCAT 236 Query 30664 TTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAAC 30702 | || || |||||||| |||||| | |||||||| Sbjct 237 TGTTAAAAACGGCAGAATCCTATGTGACAACAATTAAAC 275 Score = 138 bits (152), Expect = 4e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 30758 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 30817 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 404 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 462 Query 30818 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 30876 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 463 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 521 Query 30877 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 30936 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 522 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 578 Query 30937 CGG 30939 ||| Sbjct 579 CGG 581 >seq3699 Length=658 Score = 206 bits (228), Expect = 1e-48 Identities = 170/206 (83%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 29919 GGGCTG--AATCATTACCGCGATAACGCCATCACCTACAAAGCGCAGCGCGATAAAAAAG 29976 |||||| ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 435 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 494 Query 29977 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 30036 ||| || ||| ||||||| || || | |||||||| |||||| |||||||||||||| Sbjct 495 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATG 554 Query 30037 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 30096 |||||||||| |||| | |||| ||| ||| ||||| |||||| |||||||||||| Sbjct 555 TTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATG 614 Query 30097 CTCTTCGCGCTGACGTTGCCGCTGGT 30122 |||| || | || |||||||||||| Sbjct 615 CTCTGCGTGATGGTGTTGCCGCTGGT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193534132005180