Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019485.1 Length=59080 Score E Sequences producing significant alignments: (Bits) Value seq2234 84.2 8e-12 seq1686 84.2 8e-12 >seq2234 Length=2923 Score = 84.2 bits (92), Expect = 8e-12 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 55547 CGGGATATAGCTCAGTTTGGTAGAGTGTCTGCTTTGGGAGCAGAATGTCGTTGGTTCAAG 55606 |||| |||||| |||| ||||| | | ||||||||||||||| ||||| |||| | Sbjct 2 CGGGGTATAGCGCAGTCCGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCAGGAGTTCGAA 61 Query 55607 TCCAGCTATCCCGACCA-ATTAGTGCCTTTAGCTCAGACGGTTAGAGCAGCCGACTCATA 55665 ||| || |||||||| ||| | | | ||||||||| || |||||||| | || || Sbjct 62 TCCCCTTACCCCGACCATATTTGGGTCGTTAGCTCAGTTGG-TAGAGCAGTTGGCTTTTA 120 Query 55666 ATCGGTAGGTCACAGGTTCAAATCC 55690 | | | |||| |||||| ||||| Sbjct 121 ACCAATTGGTCGTAGGTTCGAATCC 145 >seq1686 Length=12041 Score = 84.2 bits (92), Expect = 8e-12 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 55547 CGGGATATAGCTCAGTTTGGTAGAGTGTCTGCTTTGGGAGCAGAATGTCGTTGGTTCAAG 55606 |||| |||||| |||| ||||| | | ||||||||||||||| ||||| |||| | Sbjct 10722 CGGGGTATAGCGCAGTCCGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCAGGAGTTCGAA 10781 Query 55607 TCCAGCTATCCCGACCA-ATTAGTGCCTTTAGCTCAGACGGTTAGAGCAGCCGACTCATA 55665 ||| || |||||||| ||| | | | ||||||||| || |||||||| | || || Sbjct 10782 TCCCCTTACCCCGACCATATTTGGGTCGTTAGCTCAGTTGG-TAGAGCAGTTGGCTTTTA 10840 Query 55666 ATCGGTAGGTCACAGGTTCAAATCC 55690 | | | |||| |||||| ||||| Sbjct 10841 ACCAATTGGTCGTAGGTTCGAATCC 10865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188916958284696