Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq1445 203 7e-48 seq3986 89.7 1e-13 seq1603 87.8 4e-13 >seq1445 Length=14432 Score = 203 bits (224), Expect = 7e-48 Identities = 288/405 (71%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 11872 CCCAAACCCCCCAACATTACTCGGCATAATCCCCATCATCTGCGGCGGAACGCGGTGTGC 11931 |||||| || || | || ||||| || ||||||| |||||| |||| ||| || Sbjct 11898 CCCAAAACCGCCCGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGC 11957 Query 11932 TGCCATCATGTCATCGCGGCTCACGTTCTTGATGTTCAAAAACTCATCCTTAGCTGCAAC 11991 || | || || || ||||| | ||| ||||| || || ||||| || ||||| Sbjct 11958 CGCGAGCAGATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAAC 12017 Query 11992 CTCCGAAAGTGGAATGATTTGGATACCGTCCTTTTTACCGTTGGGCGAGTACATAAACAG 12051 ||| | || |||| || || ||||| || || || |||| ||||| |||||| Sbjct 12018 CTCGCTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAG 12077 Query 12052 GTTGCGGAAGTTGCCCGGCCCTTTGGCGCTTTTCATTGCCTGGCGGATGTTGTTCACGTC 12111 |||||| |||||||| |||||||| | | | |||| ||| ||| | || | ||| Sbjct 12078 GTTGCGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTC 12137 Query 12112 CTCCTGGTTCTGCGCGGCGTCAGTCATGTACATGATGAAGCCTGCGTGGCTACCGTTAAT 12171 ||| | |||||||| ||||| |||||||||| ||||| || || ||||| ||||| | Sbjct 12138 CTCTTCCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTT 12197 Query 12172 GTAGTACTTCCGGCGGAACAGTGTTGCGGACTCATTCAGCAGGGCGGAAGGGATAGCTGA 12231 ||||||||| || |||||||| || ||| ||| || ||||| ||| | | |||| Sbjct 12198 GTAGTACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGCGCTTTGCAGCGCTGC 12257 Query 12232 CAGATATTCCGGCAGACCGTAAATCTCCTGGTTTAAATCCGGCTC 12276 ||| | |||||||| ||||| || |||||||| | ||| | ||| Sbjct 12258 CAGCCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTC 12302 >seq3986 Length=1054 Score = 89.7 bits (98), Expect = 1e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 25638 GGTGAATATCAGAAATGGAATGGTAAGGCGTGGGTAAAAGACGAAGTGGCTGAAACAGCG 25697 || ||||||||||| ||||| || | || ||||| || || | || |||| | | Sbjct 1044 GGGGAATATCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTG 985 Query 25698 GCCAGACTTCGTGAAGCTGAAGGAACCAAAAGCCGTCTTTTGCAAACAGCAGCGGAGAAA 25757 | | | || || || |||| ||| |||| | | || |||| ||| ||| | Sbjct 984 TTCCGGATCCGGGAGGCAGAAGAAACAAAAAACAGCCTGATGCAGGTAGCCAGTGAGCAT 925 Query 25758 ATCGCGCCATTACAGGATGCTGTTGATCTTGAAATCGCAACAGATGATGAGAAAGTGCAG 25817 || |||||| | ||||||||||| ||||| ||||||||||| || || || | | | Sbjct 924 ATTGCGCCACTTCAGGATGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAATCTCGTTG 865 Query 25818 CTCGACGAGTGGAAAAAATACAGGGTGTTGGTAAACCGGGTAGATACCACAA 25869 || || | ||||| || || |||||||| | ||||| || |||| |||| Sbjct 864 CTGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGAACCGTGTTAATACAACAA 813 >seq1603 Length=11327 Score = 87.8 bits (96), Expect = 4e-13 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 37 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 84 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11224 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 11271 Score = 87.8 bits (96), Expect = 4e-13 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 34070 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 34117 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11224 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 11271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109042732654452