Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq54 113 8e-20 >seq54 Length=99412 Score = 113 bits (124), Expect = 8e-20 Identities = 170/234 (73%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 48112 GTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAG 48171 |||||||| ||| | | ||| |||||||| | ||||| |||||||||| ||||| Sbjct 88639 GTGCTTGGTATACAATAGGCAAGCAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAG 88580 Query 48172 CACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGC 48231 |||||||||||| ||||| ||||| | ||||| | |||||||||||| || | || Sbjct 88579 TTCGTTGGAGAAGCTAAGACCGGGCATTAATCCCCTTTTTTTGAGCCAGAAGATCG-AGC 88521 Query 48232 GAAAG-AGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGA 48290 |||| ||||||||||| ||||| || || || || || || |||| ||| || | Sbjct 88520 AAAAGCTACCAGAGAAGAAAATGCCTTCTACAGCTGCAAAGGCAATGAG--TCTTTCAGC 88463 Query 48291 AAGAAGCGTTCTTGTCTGAGATCCA--GGAAAGCGCCCAGTCTGCCTTCTTCTT 48342 || | || | | |||| ||||| | ||| ||||| ||||| || ||||| Sbjct 88462 AAAACTCGCT-TGGTCT---ATCCAACGTAAA--GCCCATTCTGCTTTTTTCTT 88415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931442278300160