Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq3699 208 2e-49 seq1335 127 5e-25 seq3178 96.9 9e-16 seq1500 95.1 3e-15 seq1617 91.5 4e-14 >seq3699 Length=658 Score = 208 bits (230), Expect = 2e-49 Identities = 209/271 (77%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 17242 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 17301 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 17302 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAA--- 17358 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 17359 GCCACA----TCCATC--------------ATCGCTGACATGCAGAAGCATCAACGTGAT 17400 |||| | | | | || |||||||||||| || || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 17401 GTAGCAGAACTCGACGCAAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 17459 || || | ||| || | || |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 17460 AAGCCTCCGTGCTGATGTTTCTGCTGGTCGT 17490 || |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq1335 Length=14169 Score = 127 bits (140), Expect = 5e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 37504 ATTATGCCACCTTTTCATCAAGCCAGTCCGCCCACCACTGCATCATTTCTCTGCGCTTAT 37563 |||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 13083 ATTACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTAT 13024 Query 37564 CGAGATACTGAGCATGGTTGTAAAT 37588 ||||||||||||| ||||||||||| Sbjct 13023 CGAGATACTGAGCGTGGTTGTAAAT 12999 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 39485 aaaaaaCCGCCATCAGGCGGCTTGGTGTTCTTTCATTTCTTCAATTCGAATATTGGTTAC 39544 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 11406 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 11347 Query 39545 GTCT 39548 |||| Sbjct 11346 GTCT 11343 Score = 109 bits (120), Expect = 1e-19 Identities = 65/68 (96%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 204 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGT 263 |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 11224 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGT 11165 Query 264 GCGAGGAT 271 |||||||| Sbjct 11164 GCGAGGAT 11157 >seq3178 Length=10189 Score = 96.9 bits (106), Expect = 9e-16 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 18760 TTCTGCGTACTGGTGCTGAAGAATGGCTTCACCGTCACCGGAGAGAGTGCCTGTGCAAGT 18819 ||||| || ||||| ||| || || |||||||||||||| ||||| || || || ||| Sbjct 5820 TTCTGTGTCCTGGTCCTGCGCAACGGTTTCACCGTCACCGGTGAGAGCGCATGCGCCAGT 5879 Query 18820 CCGGAAAATTTTGATGCAGAAATTGGTCGGAAGATTGCCAGACAGAATGCTGTAAACAAA 18879 ||||| || || || || ||| | || || ||||||||| | ||||| || | | | || Sbjct 5880 CCGGAGAACTTCGACGCCGAAGTGGGCCGCAAGATTGCCCGCCAGAACGCCGAACAGAAG 5939 Query 18880 ATCTGGATGCTCGAAGGTTACTTGCTGAAGCAG 18912 |||||| ||| || ||| ||| |||||| Sbjct 5940 ATCTGGCCGCTGATGGGCTACGCGCTCAAGCAG 5972 >seq1500 Length=48209 Score = 95.1 bits (104), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 4282 TAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATT 4341 || |||| | ||| || ||||||||||| | || | ||| || || || ||| || Sbjct 46649 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 46708 Query 4342 ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGT 4401 |||||||||||||| |||||||||||| ||| || || || || |||||||| | Sbjct 46709 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 46768 Query 4402 TCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATATCTGATTTC 4460 ||||| || || || |||||||| | || || || | ||| || || | || ||| Sbjct 46769 TCTGATGTGGCCACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTC 46827 Query 4461 TGGATCATGCCCAAGGCGACCAATAATGATCACCTTATT 4499 ||||||| || || || || | | ||| ||||| || Sbjct 46828 CGGATCATTGCCCAGACGCCCGACGAGGATGACCTTGTT 46866 >seq1617 Length=5386 Score = 91.5 bits (100), Expect = 4e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 4273 CCTTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTC 4332 ||||| | || |||| | ||| || ||||||||||||| || | ||| || || || Sbjct 4745 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 4804 Query 4333 CCGCTCATTACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCA 4392 ||| || |||||||| ||||| || ||||||||| ||| || || || || ||| Sbjct 4805 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 4864 Query 4393 CGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATA 4451 ||||| ||| ||||| || || |||||||| | || || || | ||| || || Sbjct 4865 CGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTA 4923 Query 4452 TCTGATTTCTGGATCATGCCCAAGGCGACCAATAATGATCACCTTATTTACGCC 4505 | || ||| ||||| | || ||||| || | | || ||||| || | ||| Sbjct 4924 ACGGACTTCCGGATCTTTTCCCAGGCGTCCTACGAGAATGACCTTGTTAATGCC 4977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126733899321504