Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq3281 104 1e-17 >seq3281 Length=2714 Score = 104 bits (114), Expect = 1e-17 Identities = 178/258 (69%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 78363 ATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGT 78422 ||||| || || |||| || || || || | || || || || ||||| |||||| Sbjct 2235 ATATGGTTATTATAAAGGTGGGCATCGCCAAGGGTATGGATAAAATCTCCCGACTCCAGT 2176 Query 78423 CCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATT 78482 ||||| | || |||| || || ||||| || || || ||||||||||| || | Sbjct 2175 CCGCAAACCTGTGCAACCATCATAGTCAGTAAGGCATAGGAGGCAATGTTAAAAGGTACC 2116 Query 78483 CCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGAT 78542 || | || | || | ||||| || || | || || || || ||||| ||| | | Sbjct 2115 CCCAGAAAAATATCTGCACTTCGCTGATAAAGCTGACAGCTCAGTTTTCCGTCA---GCT 2059 Query 78543 ACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGA 78602 || ||||||||||| | | || || || || |||||||||| |||| || || | Sbjct 2058 ACATAAAACTGGAAAAAGGCATGGCAGGGTGGAAGTGCCATATGTTCTATCTCTGCCACA 1999 Query 78603 TTCCAAGCAGACACAATA 78620 ||||| |||||||||||| Sbjct 1998 TTCCAGGCAGACACAATA 1981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300131561153200