Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq6175 210 3e-49 seq6888 167 3e-36 seq794 93.3 6e-14 >seq6175 Length=1360 Score = 210 bits (232), Expect = 3e-49 Identities = 608/923 (66%), Gaps = 32/923 (3%) Strand=Plus/Minus Query 178630 GCTGTAAACTGGAACAATCCAGATAACGATTA---TGCCCAAATGTTCTGGGATCAAAAT 178686 || ||||||||||| | || || || ||||| ||||| |||||||||| || || Sbjct 974 GCCGTAAACTGGAATACCCCCGAAAATGATTACAGTGCCC---TGTTCTGGGAACAGAAC 918 Query 178687 ATTAAACAATTCTGGATCGATACAGAATATGTACCTTCTAACGATATA-ACTTCTTGGAA 178745 | | ||||||||| | ||||| |||||| ||||||| || || || || || | || Sbjct 917 CTGAGGCAATTCTGGGTGGATACTGAATATATACCTTCCAAAGACATTGACAGCTGGAAA 858 Query 178746 GTCGTTAGAACCTGAAATGAAGAAAACATACATGAGAGCTTTAGGAGGTCTTACATTACT 178805 | || || ||||| || | | || | || || | |||||| | || | || Sbjct 857 GGACTTTCT-CCGGAAATCCAGCAGGCTTATAAAAGGGCCCTGGGAGGTTTGACCCTGCT 799 Query 178806 TGACACTTTACAAAGTCATACAGGTATGCCTAAGATCATAGATCATATCGACTCTCTACA 178865 ||||| | ||||| || || || ||||| || || | || ||||| || || || || Sbjct 798 GGACACCCTGCAAAGCCACACCGGAATGCCCAAAATTCTGGACCATATTGATTCGCTGCA 739 Query 178866 AAACAAAGCTGTATTATCGTATATGTGTATGATGGAAGCGATACATGCTAAATCATACTC 178925 ||| ||||| || | || | |||||||||||||||||| || ||||| ||||| || || Sbjct 738 AAATAAAGCCGTGCTTTCTTTTATGTGTATGATGGAAGCCATTCATGCAAAATCCTATTC 679 Query 178926 AACGATATTTACAACAGTAGCTAATAAAGATGAAATCGATGAAATCTTTAGTTGGATAAC 178985 ||||| |||||||| || | | || | | |||||| ||||| | ||| ||| || Sbjct 678 CACGATTTTTACAACCGTGACCACTACACAAGAAATCAATGAACTTTTTGACTGGGTACA 619 Query 178986 TACAAACCCTCAGATTCAATATAAAGCTAGTGTTATCGATTCTTACTATCAAAAGTTAGC 179045 | | ||| | | || | |||||| || || || || | | | Sbjct 618 TGCCAACAAATACCTGCAGTTTAAAGCAGCAACAATTGACCGCTATTACCGCGCCCTGGA 559 Query 179046 AAATCCTGAAGTCGATCCAAAGGATTTATTCATGGGGTTAGCTGCATCAGTAATGTTAGA 179105 || | || || | || || ||| ||| || | || || || || | || Sbjct 558 CAAAAAACAGGTGAATGATGAAGAATTGTTCCTGGCTTTGGGCGCTTCGGTTCTGCTGGA 499 Query 179106 ATCATTTCTATTTTATTCTGGATTCTTTTTACCATTATATCTTTCTGGTAACGGTAAGAT 179165 ||| ||||| ||||| ||||||||| | || | | |||| || | ||| | || Sbjct 498 ATCTTTTCTGTTTTACAGCGGATTCTTTATGCCCCTTTGGCTTTGCGGACAAGGTGAAAT 439 Query 179166 GAAAGCTTCAGCTGATATCATTAAGAAAATCGTAGCTGATGAATCTATTCATGGTGTATT 179225 | || || ||||||||||| || ||| | || ||||||||||| ||||||||||| Sbjct 438 GGTCGCCAGTGCCGATATCATTAAAAAGATCATTGCCGATGAATCTATACATGGTGTATT 379 Query 179226 CGTTGGATTACTTGCACAAGAAGTTTACAACACTTTCGATGATACTACAAAGAAAGAATT 179285 ||||| | | || || || ||||| || || || || | ||||| | Sbjct 378 TGTTGGCCTGTTGGCCCAGGATGTTTATAAAACACTCCCCCAT-CCGCAAAGGGCG---- 324 Query 179286 AAAAGATGAACTGTTAAGAACTATTTACAG----TTTATACGAAAACGAAGCT-AAGTAT 179340 |||||| ||||| | | | ||| ||||| ||||| | |||| || || Sbjct 323 -AAAGATAAACTG--ACCGCCCTGCTGCAGGAACTTTAT--GAAAATG-AGCTAAAATAC 270 Query 179341 ACTGATTACATTTATACCGAAGTTGGATTATCTTCAGATGTAAAAGAATACGTTAAATAC 179400 ||||| | | |||||||| |||| | | | || ||||||||||| || ||| Sbjct 269 ACTGAAGAGGTCTATACCGACATTGGCCTTACCGCTGAGGTAAAAGAATATGTACGTTAC 210 Query 179401 AATGCTAATAAAGCTTTGATGAATCTTGGATTCGATCCAGAATTCACACATGGTGAAA-- 179458 ||||| || ||||| ||||||| |||||||| || ||| | | ||| ||| Sbjct 209 AATGCCAACAAAGCCCTGATGAACCTTGGATTTGA---GGAACTTTTTGA-GGTAAAAGA 154 Query 179459 --TAAATCCAATCGTATTGAATGGACTTAACACCGAAACAACTCAACATGATTTCTTTTC 179516 | || || || ||||| || ||| | ||| ||||| || ||||||||||||||||| Sbjct 153 GGTGAACCCGATTGTATTAAACGGATTAAACCTGGAAACCACACAACATGATTTCTTTTC 94 Query 179517 TATGAAATCTACTAATTACGAAA 179539 | ||||| || ||||| |||| Sbjct 93 AAAAAAATCGACCAATTATGAAA 71 >seq6888 Length=1189 Score = 167 bits (184), Expect = 3e-36 Identities = 377/564 (67%), Gaps = 2/564 (0%) Strand=Plus/Minus Query 173163 TCTTCGATGGGTGGAGGTGTATCGTTTAACGTATCTAAATTACGTGCACGTGGTGAAGCT 173222 ||||| || ||||| || ||||| |||||| | || ||| |||| || || || ||||| Sbjct 1154 TCTTCTATAGGTGGCGGGGTATCTTTTAACCTTTCCAAAATACGGGCGCGCGGGGAAGCC 1095 Query 173223 ATTAAAGGAATCGACGGAAGAGCTTCAGGTGTTTTACCAGTAATGAAAATCCTTGAAGAT 173282 |||||||| | || || | | || || | || || |||||||| || |||||| Sbjct 1094 ATTAAAGGTGTGGAGGGCCGGTCCAGTGGCGTGCTTCCGGTCATGAAAATTCTGGAAGAT 1035 Query 173283 GCTTTTTCATATGCTAATCAATTAGGACAACGTCCAGGTGCTGGAGCTGCTTATATCAAT 173342 |||| || ||||| ||||| | || || || ||||| || || || | || | ||| Sbjct 1034 ACTTTCTCCTATGCCAATCAGCTTGGTCAGCGGCCAGGGGCGGGCGCGGTATACCTGAAT 975 Query 173343 ATCTTCCATTCAGATGTTGAAGAATTTCTAGATTCTAAGAAAATCAACGCTGACGAAAAA 173402 | || ||| | || ||||||||||||| |||| ||| || |||||| |||||||| Sbjct 974 GTTTTTCATACCGACATTGAAGAATTTCTGGATTGTAAAAAGATCAACATCGACGAAAAG 915 Query 173403 TCACGTCTTAAATCGCTTTCGTTAGGTGTTATCGTTCCTGACAAATTCATGGAATTAGCT 173462 | | | ||||| ||||| | ||||| | | || || || || ||||| | ||| Sbjct 914 GTAAGGATCAAATCTCTTTCTATTGGTGTGGTGATCCCGGATAAGTTTATGGACATTGCT 855 Query 173463 G-AGAAGGATGAACCATTTTATGTTTTCTATCCATATACAGTTAAGAAAGAATACGGTAA 173521 | || | ||||| | |||| |||| |||||| |||| || | ||||||| | Sbjct 854 GCAGCA-GATGAGATCTGTTATCTTTTTTATCCACATACGGTATTTCAGCAATACGGCAT 796 Query 173522 ACATCTAGATGATTTGGATATCGATACAATGTATTCCGAATTAGTTTCTAATCCTAATGT 173581 | | | ||||| ||||||| ||| |||||| | | | || || || || || Sbjct 795 CCCTTTGGATGAAATGGATATGGATCAAATGTACGACCAGCTGGTAGGCAACCCCAAAGT 736 Query 173582 TAAGAAACGTAAGTTAAATGCTAGACGTATGTTAACTAAGATTGCACAAGTTCAGAAAGA 173641 ||| ||| | ||||| | | | | | ||| || || || || || || Sbjct 735 CCGCAAAAAAAAGGTCAATGCCCGGCATTTAATGGTTAAAATAGCGCAGACCCAAAAGGA 676 Query 173642 ATCAGGTTATCCATATTTCTTCTTGAAAACTAATGCTAACGAATATCATCCTTTGAAGAA 173701 | |||||||| ||||| || || ||| ||||| || || | ||| |||| | || Sbjct 675 AAGTGGTTATCCGTATTTATTTTTTAAAGGCAATGCCAATAAAGAACATGCTTTACAAAA 616 Query 173702 TTTGGGAGACGTTAAGTTTTCTAA 173725 | |||| || || || || ||||| Sbjct 615 TCTGGGGGATGTAAAATTCTCTAA 592 >seq794 Length=16102 Score = 93.3 bits (102), Expect = 6e-14 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 139827 TATTTGCATATCGTGTAAATGATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATG 139886 ||||||| |||||||| ||||| || ||||||| |||||||| || |||||| | Sbjct 11541 TATTTGCCTATCGTGTGGCCGATCCGGAGCGATATGGCGTAGTTGAGTTTGATGAAAACA 11600 Query 139887 ATAACGCTGTTTCGATCGAAGAAAAACC-TTTGAATCCTAAATCTAATTACGCAGTACCA 139945 | || || |||| || ||||||||||| |||| || ||||| |||| || || || Sbjct 11601 AGAAGGCCATTTCTATAGAAGAAAAACCAACTGAA-CCAAAATCCGATTATGCTGTCCCG 11659 Query 139946 GGCTTATATTTCTATAATAACGATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCT 140005 || | ||||||||| | ||| || | || | || || | || ||||| || | Sbjct 11660 GGACTTTATTTCTATGACAACTCGGTGGTGGAGATTGCCAAAAACATTAAACCATCTCCA 11719 Query 140006 CGTGGAGAATACGAAATATCAGAT---ATTAACGCATAT 140041 | || || |||||||| ||||| | ||| |||||| Sbjct 11720 AGAGGGGAGTACGAAATTACAGATGTCAATAAGGCATAT 11758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701794196521280