Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq3178 149 2e-31 seq915 107 6e-19 seq1728 104 7e-18 >seq3178 Length=10189 Score = 149 bits (164), Expect = 2e-31 Identities = 332/490 (68%), Gaps = 10/490 (2%) Strand=Plus/Plus Query 22737 ATGTGGGCGTCATC-AGCATTCGAGAAAAAAGGCCGGACGGTTCTTGGTCAATG-CGAAG 22794 ||||||||||| || ||| |||| || | || || || | |||||| | | | ||| Sbjct 787 ATGTGGGCGTCGTCGAGC-TTCGCCAAGCAGGGTCGCACAG-TCTTGGGCCAGGCCGAGC 844 Query 22795 AAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAGCAGATGCATGAAT 22854 |||| | | || || || || ||||| || | | ||||| || ||||||| ||| | Sbjct 845 AAGTAGCGTTTCGCGCCGGCGGTTGGCAGAAAGCCATGATGGAGCAACAGATGCGTGATT 904 Query 22855 GGTTCGGGAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACTATTGCGCGGAGTGCT 22914 ||||||| | || |||||||| || || ||||| || ||||| ||||| ||||| Sbjct 905 GGTTCGGCGATGTGCCGGCATTCATCATTACCCTGGCTGCCGACTACTGCGCCCAGTGCA 964 Query 22915 CCGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCCACGCTACTG 22974 |||| | || |||||||| || | || || |||||||| ||| | ||||| || | Sbjct 965 GCGACCTTGAGTTCTGCGCCTTGATCGAGCACGAGCTTTATCACCTGGCTCACGCGACCG 1024 Query 22975 ATGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGAAAATGCGCG 23034 | | | |||| || ||| | | || ||| ||| | | || ||| | Sbjct 1025 ACAAGTACGGTCAACCAGCATTCACCCAAGA---CGGTGCACCGAAGATCAAGCTGCAGG 1081 Query 23035 GTCACGATGTTGAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTGCAAGCCGTGACGTGC 23094 | ||||| || || || ||||| || ||||| |||||||| |||||||||| |||||| | Sbjct 1082 GCCACGACGTGGAAGAGTTCGTCGGTGTCGTCCGCCGCTATGGTGCAAGCCCTGACGTTC 1141 Query 23095 AGGAAATGGTTGATGCGGCAAACAATAGGCCGGAAGTGGCTCACGTCGATGTGGCGAGGG 23154 | | |||| ||||| ||||||| | | || |||| | | | | ||||||| Sbjct 1142 AAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTGGGGAAATTGAACATTGCGAGGG 1201 Query 23155 CATGCGGAACGTGCTTATTAAAATTGGCGTGAAATTTTTGACTGATTAT-GACGAGTGGT 23213 | |||||||| || | | | || ||| || ||| ||||| | | | |||| || Sbjct 1202 CCTGCGGAACCTGTCTGCTCAGATCGGCCTG--ATTCTTGACAGGCTCTAGACGGATGAG 1259 Query 23214 GATTTATGGC 23223 ||||||||| Sbjct 1260 AATTTATGGC 1269 >seq915 Length=38681 Score = 107 bits (118), Expect = 6e-19 Identities = 189/268 (71%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 14669 AAACTGGAATTGAATCTGGATGCTCAGGAACTGGAAATGCTGCGCCGGAATTGTGCTGCG 14728 |||||||| ||| || || | |||||| |||| |||||| ||||| ||||| | | Sbjct 11244 AAACTGGAGCTGATGCTCGACGAGCAGGAAATGGAGATGCTGGCGCGGAACTGTGCGGAG 11303 Query 14729 CGGCGACCAGGCAAAGAGCCATACGATATGGACGAGTATATCCAGATGCTGATCCGTCAG 14788 || || || || | ||||||||||| | |||||| ||| |||| ||||| ||| Sbjct 11304 CGTCGCCCGGGTAGGGAGCCATACGAACTTAGCGAGTACATCGCTCTGCTTATCCGCCAG 11363 Query 14789 GATGATGCGCGCGTGCGCCAAAAAATAAAGGCGATC--GGTCATCGTATTTGCGGGAAAT 14846 ||||||||||| |||||| | || || || ||| | || | | |||||||| | Sbjct 11364 GATGATGCGCGGGTGCGCGGACGCATCAAAGCCATCAGCGCCAAC--AAGTGCGGGAAGT 11421 Query 14847 GCGGTGAGTCTTTGCCAGTGGATTCATGCTGCATG-ACTGGCGACTCTGCGTGCTGGAAT 14905 ||| || |||| ||| | || ||| | || | || || ||||| |||||| | Sbjct 11422 GCGACGACATCCTGCCGGTGAAGTCCTGC-CCGTGCGCCGGTGATTCTGCCTGCTGGGTT 11480 Query 14906 AC-CAGTGGCTGGCACGAAATGAAATTA 14932 || ||| ||||||||||||| |||| || Sbjct 11481 ACGCAG-GGCTGGCACGAAACGAAACTA 11507 >seq1728 Length=3184 Score = 104 bits (114), Expect = 7e-18 Identities = 109/140 (78%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 375 GAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCACCATT 434 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 638 GAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATG 697 Query 435 GATTTAAAAAGAATTAAAACAAGCACTTATGTGCAATGTCGT-AGACCGCCGAGAGGCGG 493 | | |||| ||| ||||| || ||| |||||| | ||| || || || Sbjct 698 GGAAACATCAGAA-TAATCAAAGCA---ATAAGCAGTGTCGTGAAACCACCTTCGGGTGG 753 Query 494 tttttttGTGCCTGAAAGTC 513 ||||||||||| || || || Sbjct 754 TTTTTTTGTGCATGCAATTC 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154916897332608