Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq386 141 3e-29 seq3281 116 1e-21 seq2 109 2e-19 >seq386 Length=121086 Score = 141 bits (156), Expect = 3e-29 Identities = 341/515 (66%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || || ||||||||| || || |||||| ||| |||| || | || | Sbjct 3757 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 3698 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 | || || || | ||||||| || || ||||| || || ||||| | || ||| Sbjct 3697 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 3638 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || ||||| | |||||||| ||||| | |||| | |||| || || |||||||| Sbjct 3637 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 3578 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||| || |||||||| || |||||||||||||| || |||| ||| || ||||| Sbjct 3577 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCGC 3518 Query 45734 TCGTGGAAAGGGGCTGACG---GGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAA 45790 || ||| | | | |||| || | | |||| || |||||| || | | | Sbjct 3517 TCCTGGCCTGCGCCCGACGGCCGGCATA---TCGATCAGATTGCGAATCTCGTCAGTGCG 3461 Query 45791 ATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTG 45850 || |||| || || | |||||||| || | || ||| ||||| ||| | Sbjct 3460 ATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTC 3401 Query 45851 GGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGG 45910 | |||||| | |||| || || || | | || ||||| ||||| || | || | Sbjct 3400 GATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAG 3341 Query 45911 TTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATC 45970 | || ||| | | ||||| || | ||||| ||||| || ||||||| || ||| Sbjct 3340 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 3281 Query 45971 GCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005 || |||||| ||| |||| | ||||| || || Sbjct 3280 GCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 3246 >seq3281 Length=2714 Score = 116 bits (128), Expect = 1e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 45498 GGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACG 45557 |||||||||||||||| | | || |||| |||| || | || ||| | ||||| | Sbjct 1659 GGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAG 1718 Query 45558 GATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCT 45617 | || || || || || || ||||| | ||| | || || || | |||||| ||| Sbjct 1719 GCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAACTGATCT 1778 Query 45618 GGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGG 45677 ||||||||| || || || ||| || |||| || | | || ||| | ||| |||| Sbjct 1779 GGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGG 1838 Query 45678 ACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGT 45737 | |||||||| ||||||||||| || || ||||| | || || | |||||||| || | Sbjct 1839 ATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGCGTTCAT 1898 Query 45738 GG 45739 || Sbjct 1899 GG 1900 >seq2 Length=124989 Score = 109 bits (120), Expect = 2e-19 Identities = 201/295 (68%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 45436 TATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGA 45495 ||||||||||||||| || ||||| ||| | | |||| | ||||| | ||| ||| Sbjct 93547 TATGAAACAATATCTCGATTTGCTACAACATGTACTAGACCATGGCGTCCAAAAATCAGA 93488 Query 45496 TCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGA 45555 || || || || || || | || ||| ||| || | ||| |||| | Sbjct 93487 CCGCACCGGTACGGGAACGAAAAGCATTTTTGGCTACCAGATGAGATTTGACTTATCTGC 93428 Query 45556 CGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCT 45615 ||||| || | |||| || |||||| |||||| | |||||| || |||||||||| Sbjct 93427 GGGATTTCCTTTGTTGACCACCAAAAAGCTGCATACCAAATCGATCGTTCATGAACTGCT 93368 Query 45616 CTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTG 45675 ||||||||| ||||| ||||||| || || | | || |||| || || || || Sbjct 93367 GTGGTTTTTACAAGGCAATACGAACATTGCTTACCTCAACCAGCATGGGGTAACTATCTG 93308 Query 45676 GGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGG 45730 ||| |||||||| ||| || | || || | || || | || || |||||||| Sbjct 93307 GGATGAGTGGGCTGATAAACAAGGGAATTTAGGACCTGTTTATGGATCGCAATGG 93253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157735837074636