Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq3699 221 3e-53 seq2008 152 1e-32 seq4808 89.7 1e-13 seq2982 89.7 1e-13 >seq3699 Length=658 Score = 221 bits (244), Expect = 3e-53 Identities = 212/271 (78%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 36007 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 36066 |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 36067 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAA--- 36123 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 36124 GCCACA----TCCATC--------------ATCGCTGACATGCAGAAGCGTCAACGTGAT 36165 |||| | | | | || |||||||||||| ||| || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 36166 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 36224 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 36225 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 36255 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq2008 Length=9006 Score = 152 bits (168), Expect = 1e-32 Identities = 342/504 (68%), Gaps = 10/504 (2%) Strand=Plus/Plus Query 11825 CGATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 11884 ||| ||| | ||||| | ||||| || ||| | ||||||| | || ||||| || Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 11885 AAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-T 11940 ||||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 11941 ATGCGTCAGAAAACCATCGATGCCATCATGGCGCATGCCGCTGCGGAATACCCGCGAGAG 12000 ||||| || | | ||| | || ||| ||||||||| || ||||| || ||| |||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12001 TGCTGCGGCGTGGTGGCGCAGAAAAGCCGGGTTGAGCGTTATTTCCCCTGCCGCAACCTT 12060 |||||||| || || | | | |||| || || ||||| ||||| ||| | Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAGTACTTCCCGTGCCGGAACATC 4046 Query 12061 TCTGAAGAGCCGACAGAACATTTTCACCTTTCTCCCGAAGACTACGCAGCTGCCGAAGA- 12119 | ||||||| ||| | |||| ||| ||| || |||||||| || || || || Sbjct 4047 GCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGAC 4106 Query 12120 CTGGGGGACGGTGGTAGCCATTGTTCACAGCCACCCTGACGCGACGACGCAGGCCAGC-G 12178 ||||| || ||| | | ||||||||| ||||| ||||| || | || |||| | Sbjct 4107 CTGGGCGA-AGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCA-GCCGGCCGTCAC 4164 Query 12179 AGCTTGATAAGGCGCAATGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCGG 12238 || || ||| || || || || |||||||||| ||| || ||||| | Sbjct 4165 CGCACGACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCCG 4224 Query 12239 AGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTT 12297 |||||||||| || || ||| ||| || | || || ||||||||| |||| |||||| Sbjct 4225 AGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTTT 4283 Query 12298 GTGCTTGGACACTTCGACTGCTGG 12321 || | ||| || ||||||||| Sbjct 4284 GTACATGGCGCCTGGGACTGCTGG 4307 Score = 95.1 bits (104), Expect = 3e-15 Identities = 196/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 15019 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15078 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15079 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15138 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15139 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15198 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15199 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15258 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 15259 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCCC 15310 ||||||| | | || ||| ||||| || || || |||||||| ||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCC 8936 >seq4808 Length=2437 Score = 89.7 bits (98), Expect = 1e-13 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 20053 TCCTATTATCGGCACCATTTAAATCAATAAGTTACCTAGCATTTAAGTAAACTACGTTCT 20112 ||||||||||| ||||||| ||||||| ||||||| |||||| || || ||||| | Sbjct 138 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 81 Query 20113 CCTCTTGTGCCGTATTTGTGCCATTG 20138 |||| ||||||||||||||||||||| Sbjct 80 CCTCCTGTGCCGTATTTGTGCCATTG 55 >seq2982 Length=1456 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 20024 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 20075 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123895761351948