Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq1335 1193 0.0 seq3699 260 3e-65 seq2008 156 1e-33 >seq1335 Length=14169 Score = 1193 bits (1322), Expect = 0.0 Identities = 1232/1602 (77%), Gaps = 14/1602 (1%) Strand=Plus/Minus Query 20475 TTGACAAAAAATTAGCGCAAGAAGACAAAAA--TCACCTTGCGCTAATGCTCTGTCTCAG 20532 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 12981 TTGACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGTTACAG 12922 Query 20533 GTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGCGTTTTGTCGCA 20592 ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| Sbjct 12921 GTCACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCA 12862 Query 20593 TTATGTAGTCTATCATTTAACCACAGATT--AGTGTAATGCGATGATTTTTAA-GTGATT 20649 ||||| ||||||| |||| || || | | | ||| || |||| || | || || Sbjct 12861 TTATGCAGTCTATTTTTTAG--ACTGAATCAATTATAAGCCGTTGATATTAATTGTTTTT 12804 Query 20650 AATGTTATTTTGTCATCCTTTAGGTGAATAAGTTGTATATTTAAAATCTCTTTAATTATC 20709 | ||| ||| | ||| | | ||||||| | ||||| | || ||||| Sbjct 12803 ACCGTTTCACATTCAACTTTTTTAT-ACTAAGTTGGCATTATAAAAAAGCATTGCTTATC 12745 Query 20710 AGTAAATT--AATGTAAGTAGGTCATTATTAGTCAAAATAAAATCATTTGTCGATTTCAA 20767 | | || || | | |||||| ||| |||||||||||||||||| | |||||||| Sbjct 12744 AATTTGTTGCAACGAAC--AGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAA 12687 Query 20768 TTTTGTCCCATTCCCGTCCACGGCTGTCCCTATACCGCGCCGCCATTGAATCTGATTTAT 20827 |||||||||| |||| || | | || | |||| | | ||||| | || || |||| Sbjct 12686 TTTTGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTAT 12627 Query 20828 GCCCGAGAAGACGTTGAGCAAACTTATCGCCAATCTGGTTCCGGTATAGCCTCGCTGACA 20887 ||||||||||| |||||||||| ||||||| ||||| ||| || || || || |||| Sbjct 12626 GCCCGAGAAGATGTTGAGCAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACA 12567 Query 20888 GGCTACGCAGTTCATGGAATGTTGGCGGGTTTCCATCAAATGAGAGTCCAGATGCATTTC 20947 || |||| || || || |||||||| | || || || ||||| || ||||| |||| Sbjct 12566 AACTGCGCAACTCGTGAAAGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTC 12507 Query 20948 TCGCCTTTGTAAAATACTTTGATACTGTTTTCGGGGAAAGCGGATCGTGATGCTTTGATG 21007 || |||||||| |||||||||| | |||||||| || || | | |||| Sbjct 12506 GTGCGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATG 12447 Query 21008 CGATTATAGTTTCACTGCTGCTGGCCTCCCTGCATTGCTGTAGTGTATCAGCCAATGAGA 21067 | ||||| ||||| | || || |||||| | ||||| || || ||| | Sbjct 12446 CAATTATGGTTTCTCCGCCAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATA 12387 Query 21068 TATTGAGCGCGTCAATCGTTAGCGTTAGTGGAATGGCGAGTTTAGCCCCTGTTTTACTCT 21127 | ||| || |||| | ||| ||| ||||| | ||| | |||||||| || | Sbjct 12386 TCCCGAGAGCATCAACATGCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTT 12327 Query 21128 GTTCAATGTGAAGATGGTTGTCGTTTATGTCTGACCATTTCATTCTGCACAAATCGCCTA 21187 | || | | ||||| || || || ||||| |||||| ||| ||||| || | Sbjct 12326 GCTCGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAA 12267 Query 21188 CTCTCTGCCCTGTAACGACAGCCAAATCCATTGCCAGTCTCAGCCAGATTGGGAGCGGTT 21247 ||| |||||| ||||| ||||||| |||||||| ||||| ||||| ||| | || Sbjct 12266 CTCGCTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATT 12207 Query 21248 CGGCCGCATGGTATATCGCGACATATTCATTAGCTGTCAGTCTTGAACGCCTTACTTCTG 21307 | || || || || || | ||||| | ||| || |||||||| | |||||| |||| Sbjct 12206 CTGCTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTG 12147 Query 21308 ATTTTGCTGTGCGGGTTGCTGTTACCGGATTCGTAGCCACATGCCCCTCGGCTATTGCCT 21367 ||||||| | ||| || |||| ||||| || || | | ||| || || ||||| |||| Sbjct 12146 ATTTTGCAGCGCGAGTGGCTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCT 12087 Query 21368 CACGAAAAACGTCAACAAGGGTTGACCTGATTAATTTTGCGGAAGCCGATTTGCCTTCTG 21427 | || || | || || ||||| |||||||| || || || |||| ||||| || Sbjct 12086 CTCGGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGT 12027 Query 21428 CTACGTAGGTGTTTAGCATTGCTGCCACCTCTTTCGTTGATATGTCAGCGAGCGGTTTGT 21487 ||| ||| || |||||||| || | ||||| || | ||||| | || || | Sbjct 12026 CTATGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCAT 11967 Query 21488 CAGGCAATTTTCTTCGGATTGCTCTGATTTTGCTGGCGTAGTCGAGTAGAGTTTTCGGCC 21547 |||||| || | |||||| | |||||||| ||| | | || || ||| || Sbjct 11966 CAGGCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCT 11907 Query 21548 TGATACCCCT-CTCGCTGAGGATTGTTTCATATCGGTCAAGCCACGCATGAAGAGTGATT 21606 |||| || || || || |||||| |||| || || |||||||| | ||| | || | Sbjct 11906 TGATTCCTCTGCTGGCC-AGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACG 11848 Query 21607 GCGTCAGCGCCTTTAATTCTGTCTATCAGTGACTCACGCCTGTTCCCGGATAGCAACTCA 21666 | | | | | || ||||| || |||| | || | ||| || || | |||||| Sbjct 11847 GAATTATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCA 11788 Query 21667 ATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCT 21726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11787 ATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCT 11728 Query 21727 TTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGG 21786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11727 TTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGG 11668 Query 21787 GGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCT 21846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11667 GGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCT 11608 Query 21847 ATCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCT 21906 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11607 ACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCT 11548 Query 21907 TCCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTC 21966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11547 TCCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTC 11488 Query 21967 AAGGCTTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAA 22026 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 11487 AAGGCTTCTTGGGCGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAA 11428 Query 22027 GTCTCCGCAATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22068 |||||||||||||||||||||||||| |||| | | ||||| Sbjct 11427 GTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGC 11386 >seq3699 Length=658 Score = 260 bits (288), Expect = 3e-65 Identities = 222/271 (82%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 34997 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGTCTGTCA 35056 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 35057 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGAGATAAAAAA 35116 |||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 35117 GTCAGTGAGCTGAAGCAGGCGACCGCCACCATCGCTGACATGCGGAAGCGTCAACGTGAT 35176 | ||| || ||||||| ||||| ||| | || ||||||||| || ||| || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 35177 GTAGCAGAACTCGACGCAAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 35235 || || | ||| || | || |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 35236 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 35266 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq2008 Length=9006 Score = 156 bits (172), Expect = 1e-33 Identities = 343/505 (68%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 12355 CGATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 12414 ||| ||| | ||||| | ||||| || ||| | ||||||| | || ||||| || Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12415 AAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-T 12470 ||||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12471 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAG 12530 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12531 TGTTGCGGCGTGGTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCT 12589 || ||||| || || || || | |||| |||| || || || || | ||| | Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCGTGCCGGAACAT 4045 Query 12590 CGCTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGA 12649 ||| || ||||||| ||| | |||| || || || ||||| || || || ||||| Sbjct 4046 CGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGA 4105 Query 12650 CTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG--AGC 12707 | ||| ||||||| || |||||| ||||| |||||||| | | |||| | | Sbjct 4106 CCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACC 4165 Query 12708 GAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCG 12767 | || || || ||||| || || || |||||||| ||| || ||||| Sbjct 4166 GCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCC 4223 Query 12768 GAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12826 ||||||||||| || || ||| ||| || | || || ||||||||| |||| ||||| Sbjct 4224 GAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTT 4282 Query 12827 TGTGCTTGGACACTTCGACTGCTGG 12851 ||| | ||| || ||||||||| Sbjct 4283 TGTACATGGCGCCTGGGACTGCTGG 4307 Score = 96.9 bits (106), Expect = 8e-16 Identities = 196/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15459 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15518 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15519 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15578 | | || || |||| | ||||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15579 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15638 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15639 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15698 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 15699 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACATGCC 15749 ||||||| | | || ||| ||||| || || || |||||| |||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 8935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120171305211516