Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq3699 203 9e-48 seq2008 125 2e-24 seq3178 113 1e-20 >seq3699 Length=658 Score = 203 bits (224), Expect = 9e-48 Identities = 206/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 38407 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 38466 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 38467 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGAGCAGCGCGATAA---- 38522 |||||||||||||||||||||||||||||||| |||||||||| |||||||| || Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 38523 -----------------GGCCACATCCACAATCGCTGACATGCAGAAGCGTCAACGTGAC 38565 ||| | | |||| |||||||||||| ||| || ||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 38566 GTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 38624 || || | ||| |||| | ||| || |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 38625 AAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 38655 ||| |||| || |||| | ||||| ||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq2008 Length=9006 Score = 125 bits (138), Expect = 2e-24 Identities = 332/503 (66%), Gaps = 8/503 (2%) Strand=Plus/Plus Query 12634 CGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12693 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12694 AAATAACGAACTCTCGTTTGGTGGCTTCCCTGGTACGTCGCTGAT---CAGGAGTTGA-T 12749 | ||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12750 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCCGCCGCTGAATATCCTCGTGAG 12809 ||||| || | | ||| | ||||| ||||||||| || || || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12810 TGCTGCGGTGTGGTGGCGCAAAAAAGCCGTGTTGAACGTTATTTTCCTTGCCGGAATCTT 12869 |||||||| || || | | | || | | || || || |||||||| | Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAGTACTTCCCGTGCCGGAACATC 4046 Query 12870 GCCGCTGCGCCGAAGGAAAATTTTGTCCTCTGCCCGGAAGATTACGCAGCTGCTGAGGAC 12929 ||| | | |||||| ||| | ||| || || || || ||||| || || |||||| Sbjct 4047 GCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGAC 4106 Query 12930 TGGGGTACGGTGATCGCCATCGTTCACAGCCACCCTGACGCCACTACGCAGCCG--AGCG 12987 ||| ||||||| || |||||| ||||| |||||||| | | |||| | || Sbjct 4107 CTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCG 4166 Query 12988 AACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATCGTGAGCTGGCCCG 13047 || || || ||||| || || || |||||||| || || ||||||| Sbjct 4167 CAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCCG 4224 Query 13048 AGGGGGATTTACGTACCATTCAGCCGCGTGGTGAGTTGCCACTGCTGGAGCGTCCGTTTG 13107 |||||||||| || || || ||| || ||||||||| |||| ||||||| Sbjct 4225 AGGGGGATTTGCGGACGATCACGCCAACGGGCAGCACGCCACTGCTCAAGCGGCCGTTTG 4284 Query 13108 TGCTTGGACACTTCGACTGCTGG 13130 | | ||| || ||||||||| Sbjct 4285 TACATGGCGCCTGGGACTGCTGG 4307 Score = 102 bits (112), Expect = 2e-17 Identities = 197/291 (68%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15738 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15797 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15798 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15857 | | || || |||| | ||||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15858 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15917 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15918 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15977 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 15978 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCC 16028 ||||||| | | || ||| ||||| || || || ||||||||||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 8935 >seq3178 Length=10189 Score = 113 bits (124), Expect = 1e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 40460 CTGCTGACATTCTGCGTTCTGGTGCTGAAGAATGGCTTTACGGTCACCGGGGAAAGCGCC 40519 ||| |||| ||||| || ||||| ||| || || || || |||||||| || ||||| Sbjct 5811 CTGTTGACCTTCTGTGTCCTGGTCCTGCGCAACGGTTTCACCGTCACCGGTGAGAGCGCA 5870 Query 40520 TGCGCCAGCCCAGAGAACTTCGATGAAGAAATCGGGCGCAAGATTGCTCGCCAGAATGCT 40579 |||||||| || ||||||||||| | ||| | || ||||||||||| |||||||| || Sbjct 5871 TGCGCCAGTCCGGAGAACTTCGACGCCGAAGTGGGCCGCAAGATTGCCCGCCAGAACGCC 5930 Query 40580 GTAAACAAAATCTGGATGCTCGAAGGTTACTTGCTGAAGCAG 40621 | | | || |||||| ||| || ||| ||| |||||| Sbjct 5931 GAACAGAAGATCTGGCCGCTGATGGGCTACGCGCTCAAGCAG 5972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132880531835052