Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq1335 2044 0.0 seq3699 217 4e-52 seq2008 156 1e-33 >seq1335 Length=14169 Score = 2044 bits (2266), Expect = 0.0 Identities = 1305/1411 (92%), Gaps = 9/1411 (1%) Strand=Plus/Minus Query 32636 ACACAAAAGACA--CTAATACaaaagaaaaaagaaaaGATTATTCGTCAGAGAATTCTGG 32693 |||||||||||| |||| ||||||| || | |||| || |||||| |||||||||| Sbjct 3670 ACACAAAAGACAAACTAA--CAAAAGACAATATAAAACCTTTTTCGTCCGAGAATTCTGA 3613 Query 32694 CGAATCCTCTGACCAGCCAGAAAACGATCTTTCTGTGGTTAAACCGGATGCTGCAATTCA 32753 ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| Sbjct 3612 CGAATCCTCTGACCAGCCAGAAAACGATCTTCCTGTGATGAAACCGGATGCTGCAATTCA 3553 Query 32754 GAGCGGCAGCAAGTGGGGAACAGCAGAAGACCTGACCGCCGCAGAGTGGATGTTTGACAT 32813 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3552 GAGCGGCAGCAAGTGGGGGACAGCAGAAGACCTGACCGCCGCAGAGTGGATGTTTGACAT 3493 Query 32814 GGTGAAGACTATCGCACCATCAGCCAGAAAACCGAATTTTGCTGGGTGGGCTAACGATAT 32873 ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 3492 GGTGAAGACCATCGCGCCATCAGCCAGAAAACCGAATTTTGCAGGGTGGGCTAACGATAT 3433 Query 32874 CCGCCTGATGCGTGAACGTGACGGACGTAACCATCGCGACATGTGTGTACTGTTCCGCTG 32933 ||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 3432 CCGCCTGATGCGTGAACGTGATGGACGTAACCACCGCGACATGTGCGTGCTGTTCCGCTG 3373 Query 32934 GGCATGCCAGGACAACTTCTGGTCCGGTAACGTTCTTAGCCCGGCCAAACTCCGCGACAA 32993 ||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||| Sbjct 3372 GGCATGCCAGGACAACTTCTGGTCCGGTAACGTGCTGAGTCCGGCTAAACTCCGCGACAA 3313 Query 32994 GTGGACCCAGCTCGAAATCAACCGTAACAAGCAACAGGCAGTCGTGACAGCCAGCAAACC 33053 ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| Sbjct 3312 GTGGACCCAGCTCGAAATCAACCGTAACAAGCAACAGGCTGGCGTGACAGCCAGAAAACC 3253 Query 33054 AAAACTCGACCTGACAAACACAGACTGGATTTACGGGGTGGATCTATGAAAAACATCGCC 33113 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 3252 AAAACTCGACCTGACAAACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCC 3193 Query 33114 GCACAGATGGTTAACTTTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAA 33173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3192 GCACAGATGGTTAACTTTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAA 3133 Query 33174 CAGTACGACGAAAAGCCGCAGGTACAGCAGGTAGCGCAGATCATCAACGGTGTGTTCAGC 33233 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3132 CAGTACGACGAAAAGCCGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGC 3073 Query 33234 CAGTTACTGGCAACTTTCCCGGCGAGCCTGGCTAACCGTGACCAGAACGAACTGAACGAA 33293 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3072 CAGTTACTGGCAACTTTCCCGGCGAGCCTGGCTAACCGTGACCAGAATGAACTGAACGAA 3013 Query 33294 ATCCGCCGCCAGTGGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTT 33353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3012 ATCCGCCGCCAGTGGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTT 2953 Query 33354 AACGCAGGAATGCGCGTAGCCCGTCGGCAGAATCGACCATTTCTGCCATCACCCGGGCAG 33413 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2952 AACGCAGGAATGCGCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAG 2893 Query 33414 TTTGTTGCATGGTGCCGGGAAGAAGCATCCGTTATCGCCGGACTGCCAAACGTCAGCGAG 33473 ||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 2892 TTTGTCGCCTGGTGCCGGGAAGAAGCATCCGTTAACGCCGGGCTGCCAAACGTCAGCGAG 2833 Query 33474 CTGGTTGATATGGTTTACGAGTATTGCCGGAAGCGAGGCCTGTATCCGGATGCGGAGTCT 33533 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 2832 CTGGTTGATATGGTTTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCT 2773 Query 33534 TATCCGTGGAAATCAAACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGG 33593 |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 2772 TATCCGTGGAAATCGAACGCGCATTACTGGCTGGTTACCAACCTGTACCAGAACATGCGG 2713 Query 33594 GCCAATGCGCTTACTGATGCGGAATTACGCCGTAAGGCCGCAGATGAGCTTGTCCA-TAT 33652 ||||||||||||||||||||||||||||| || ||||| || ||||| || |||| ||| Sbjct 2712 GCCAATGCGCTTACTGATGCGGAATTACGGCGCAAGGCTGCCGATGAACT-GTCCTGTAT 2654 Query 33653 GACTGCGAGAATTAACCGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCAT 33712 ||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 2653 GACCGCGCGAATTAACCGTGGTGAGGCGATACCTGAACCAGTAAAACAGCTTCCTGTCAT 2594 Query 33713 GGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATCAAAGCTAA 33772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2593 GGGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATCAAAGCTAA 2534 Query 33773 GTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGG 33832 ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2533 GTTTGGGCTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTTATTACCTGGGG 2474 Query 33833 ACGCATAATAGCTTCTGTGCGCCGGACGTTGCCGCGCTAACAGGCGCAACAGTAACCAGC 33892 |||||||| || |||||||||| ||||||||| ||| |||||| | ||||||||| || Sbjct 2473 ACGCATAAGAGTTTCTGTGCGCAGGACGTTGCTGCGGCAACAGGTGTGACAGTAACCTGC 2414 Query 33893 ATAAATCAGGCCGCGGCTAAAATGGCACGGGCAGGTCTTCTGGTTATCGAAGGTAAGGTC 33952 ||||||||||| || ||||||||||| || ||||| | ||||| || || ||||||||| Sbjct 2413 ATAAATCAGGCAGCAGCTAAAATGGCGCGTGCAGGAATCCTGGTCATTGATGGTAAGGTC 2354 Query 33953 TGGCGAACGGTGTATTACCGGTTTGCTACCAGGGAAGA-ACGGGAAGGAAAGATGAGCAC 34011 ||||||||| | ||| ||||| ||||| ||| || | || || ||| |||| | Sbjct 2353 TGGCGAACGTTTGTTTAACGGTTAGCTACTCAGGATGATAGGGCGCGGCAAG-TGAGTAT 2295 Query 34012 GAACCTGGTTTTTAAGGAGTGTCGCCAGAGT 34042 ||| | || |||| |||| || | |||||| Sbjct 2294 GAAGC-GGATTTTCAGGAATGCCATCAGAGT 2265 Score = 412 bits (456), Expect = 9e-111 Identities = 246/258 (95%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 22734 CAGGCAAAAAGAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 22793 || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11414 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 11355 Query 22794 TTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTG 22853 |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| || Sbjct 11354 TTGGTTACGTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGCTG 11295 Query 22854 ATGTTCTCCGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCACCTGTGACTCGG 22913 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 11294 ATGTTCTCGGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGG 11235 Query 22914 AAGTGCATTTATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAAT 22973 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 11234 AAGTGCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAAT 11175 Query 22974 CCCCGAGAGTGCGAGGAT 22991 || || ||||||||||| Sbjct 11174 CCTCGTCAGTGCGAGGAT 11157 >seq3699 Length=658 Score = 217 bits (240), Expect = 4e-52 Identities = 211/271 (78%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 38854 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 38913 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 38914 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGATAAA--- 38970 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 38971 GCCA---------------CGTAC---ATCATCGCTGACATGCAGAAGCGTCAACGTGAT 39012 |||| || || || |||||||||||| ||| || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 39013 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 39071 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 39072 AAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 39102 ||| |||| || |||| | ||||| ||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq2008 Length=9006 Score = 156 bits (172), Expect = 1e-33 Identities = 343/505 (68%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 11918 CGATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 11977 ||| ||| | ||||| | ||||| || ||| | ||||||| | || ||||| || Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 11978 AAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-T 12033 ||||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12034 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAG 12093 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12094 TGTTGCGGCGTGGTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCT 12152 || ||||| || || || || | |||| |||| || || || || | ||| | Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCGTGCCGGAACAT 4045 Query 12153 CGCTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGA 12212 ||| || ||||||| ||| | |||| || || || ||||| || || || ||||| Sbjct 4046 CGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGA 4105 Query 12213 CTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG--AGC 12270 | ||| ||||||| || |||||| ||||| |||||||| | | |||| | | Sbjct 4106 CCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACC 4165 Query 12271 GAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCG 12330 | || || || ||||| || || || |||||||| ||| || ||||| Sbjct 4166 GCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCC 4223 Query 12331 GAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12389 ||||||||||| || || ||| ||| || | || || ||||||||| |||| ||||| Sbjct 4224 GAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTT 4282 Query 12390 TGTGCTTGGACACTTCGACTGCTGG 12414 ||| | ||| || ||||||||| Sbjct 4283 TGTACATGGCGCCTGGGACTGCTGG 4307 Score = 95.1 bits (104), Expect = 3e-15 Identities = 196/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 15115 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15174 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15175 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15234 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15235 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15294 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15295 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15354 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 15355 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCCC 15406 ||||||| | | || ||| ||||| || || || |||||||| ||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCC 8936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130138385003136