Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019714.1 Length=39026 Score E Sequences producing significant alignments: (Bits) Value seq3699 212 2e-50 seq2008 143 7e-30 seq4808 89.7 1e-13 seq2982 89.7 1e-13 >seq3699 Length=658 Score = 212 bits (234), Expect = 2e-50 Identities = 210/271 (77%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 36275 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 36334 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 36335 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAACCCAGCGCGATAAA--- 36391 |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 36392 GCCA---------------CGTAC---ATCATCGCTGACATGCAGAAGCGTCAACGTGAT 36433 |||| || || || |||||||||||| ||| || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 36434 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 36492 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 36493 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 36523 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq2008 Length=9006 Score = 143 bits (158), Expect = 7e-30 Identities = 338/504 (67%), Gaps = 10/504 (2%) Strand=Plus/Plus Query 12681 CGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12740 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12741 AAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGAT- 12796 | ||||||||||| || || || ||||| | | ||| |||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12797 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCCGCCGCTGAATATCCTCGTGAG 12856 ||||| || | | ||| | ||||| ||||||||| || || || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12857 TGCTGCGGTGTGGTGGCGCAAAAAAGCCGTGTTGAACGTTATTTTCCTTGCCGGAATCTT 12916 |||||||| || || | | | || | | || || || |||||||| | Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAGTACTTCCCGTGCCGGAACATC 4046 Query 12917 GCCGCTGCGCCGAAGGAAAATTTTGTCCTCTGCCCGGAAGATTACGCAGCTGCTGAGGAC 12976 ||| | | |||||| ||| | ||| || || || || ||||| || || |||||| Sbjct 4047 GCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGAC 4106 Query 12977 TGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG--AGCG 13034 ||| ||||||| || |||||| ||||| |||||||| | | |||| | || Sbjct 4107 CTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCG 4166 Query 13035 AACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGG 13094 || || || ||||| || || || |||||||| ||| || ||||| | Sbjct 4167 CAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCCG 4224 Query 13095 AGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTT 13153 |||||||||| || || ||| ||| || | || || ||||||||| |||| |||||| Sbjct 4225 AGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTTT 4283 Query 13154 GTGCTTGGACACTTCGACTGCTGG 13177 || | ||| || ||||||||| Sbjct 4284 GTACATGGCGCCTGGGACTGCTGG 4307 Score = 102 bits (112), Expect = 2e-17 Identities = 197/291 (68%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15785 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15844 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15845 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15904 | | || || |||| | ||||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15905 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15964 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15965 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 16024 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 16025 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCC 16075 ||||||| | | || ||| ||||| || || || ||||||||||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 8935 >seq4808 Length=2437 Score = 89.7 bits (98), Expect = 1e-13 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 20925 TCCTATTATCGGCACCATTTAAATCAATAAGTTACCTAGCATTTAAGTAAACTACGTTCT 20984 ||||||||||| ||||||| ||||||| ||||||| |||||| || || ||||| | Sbjct 138 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 81 Query 20985 CCTCTTGTGCCGTATTTGTGCCATTG 21010 |||| ||||||||||||||||||||| Sbjct 80 CCTCCTGTGCCGTATTTGTGCCATTG 55 >seq2982 Length=1456 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 20896 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 20947 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124750082476944