Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq3699 203 8e-48 seq2008 141 2e-29 seq1335 100 7e-17 >seq3699 Length=658 Score = 203 bits (224), Expect = 8e-48 Identities = 206/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 36823 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 36882 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 36883 TGGGCGGTTAATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGATAA---- 36938 ||||| ||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 36939 -----------------GGCCACATCCACAATCGCTGACATGCAGAAGCGTCAACATGAT 36981 ||| | | |||| |||||||||||| ||| || | |||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 36982 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 37040 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 37041 AAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 37071 ||| |||| || |||| | ||||| ||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq2008 Length=9006 Score = 141 bits (156), Expect = 2e-29 Identities = 342/510 (67%), Gaps = 22/510 (4%) Strand=Plus/Plus Query 12633 CGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12692 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12693 AAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGAT- 12748 | ||||||||||| || || || ||||| | | ||| |||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12749 ATGCGTCAGAAAACCGTCGATGAGATTATGGCGCATGCTGCAGCTGAATATCCTCGCGAG 12808 ||||| || | | | | | | ||| ||||||||| ||||| || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12809 TGTTGCGGCGTGGTGGCG-CAGAAAAGCCGT-GTTGAACGTTATTTCCCGTGCCGGAATC 12866 || ||||| || || | | | | || | | ||| || |||||||||||||| Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAG--TACTTCCCGTGCCGGAACA 4044 Query 12867 TTGCCGCGGCGCCGGAGGACAATTTTGTCCTTTGCCCGGAAGATTACGCAGCTGCTGAGG 12926 | ||| ||| |||| | || | ||| ||| || || || ||||| || || |||| Sbjct 4045 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 4104 Query 12927 ACTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAA------CGCAAC 12980 || ||| ||||||| || |||||| ||||| |||||||| | || || Sbjct 4105 ACCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCAC 4164 Query 12981 CGAGCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCACATCGTGAGCT 13040 || ||| ||| || ||||| || || || ||||||||||| || | Sbjct 4165 CGCACGACCTG------GCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGT 4218 Query 13041 GGCCTGAGGGGGATTTGCGCACCATCCAGCC-GCGTGGGGAACTGCCGCTGCTGGAGCGT 13099 |||| |||||||||||||| || ||| ||| || | | || ||| ||||| |||| Sbjct 4219 GGCCCGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGG 4277 Query 13100 CCGTTTGTGCTTGGCCACTTCGACTGCTGG 13129 |||||||| | |||| || ||||||||| Sbjct 4278 CCGTTTGTACATGGCGCCTGGGACTGCTGG 4307 Score = 102 bits (112), Expect = 2e-17 Identities = 197/291 (68%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15737 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15796 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15797 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15856 | | || || |||| | ||||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15857 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15916 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15917 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15976 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 15977 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCC 16027 ||||||| | | || ||| ||||| || || || ||||||||||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 8935 >seq1335 Length=14169 Score = 100 bits (110), Expect = 7e-17 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 23097 CATTTCTTGTCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCG 23156 ||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 11229 CATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCG 11170 Query 23157 CGAGTGCGAGGAT 23169 ||||||||||| Sbjct 11169 TCAGTGCGAGGAT 11157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126516319409520