Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq2008 159 9e-35 seq1335 129 2e-25 seq3699 89.7 1e-13 >seq2008 Length=9006 Score = 159 bits (176), Expect = 9e-35 Identities = 344/505 (68%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 12686 CGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12745 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12746 AAATAACGAACTCTCGTTTGGTGGCTTCCCTGGTACGTCGCTGAT---CAGGAGTTGA-T 12801 | ||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12802 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAG 12861 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12862 TGTTGTGGCGTGGTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCT 12920 || || || || || || || | |||| |||| || || || || | ||| | Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCGTGCCGGAACAT 4045 Query 12921 CGCTACCGAGCCGACAGAACATTTTCACCTGTCTCCAGAAGACTATGCAGCTGCTGAGGA 12980 ||| || ||||||| ||| | |||| || ||| || ||||| || || || ||||| Sbjct 4046 CGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGA 4105 Query 12981 CTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCAGCCG--AGC 13038 | ||| ||||||| || |||||| ||||| |||||||| | | |||| | | Sbjct 4106 CCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACC 4165 Query 13039 GAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCG 13098 | || || || ||||| || || || |||||||| ||| || ||||| Sbjct 4166 GCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCC 4223 Query 13099 GAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 13157 ||||||||||| || || ||| ||| || | || || ||||||||| |||| ||||| Sbjct 4224 GAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTT 4282 Query 13158 TGTGCTTGGACACTTCGACTGCTGG 13182 ||| | ||| || ||||||||| Sbjct 4283 TGTACATGGCGCCTGGGACTGCTGG 4307 Score = 95.1 bits (104), Expect = 3e-15 Identities = 196/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 15791 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15850 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15851 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15910 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15911 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15970 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15971 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 16030 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 16031 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCCC 16082 ||||||| | | || ||| ||||| || || || |||||||| ||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCC 8936 >seq1335 Length=14169 Score = 129 bits (142), Expect = 2e-25 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 20856 TTGCTCCACCTTTTCATCAACCCAATCCGCCCACCACTGCATCATTTCTCTGCGCTTATC 20915 || |||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 13082 TTACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATC 13023 Query 20916 GAGATACTGAGCATGGTTGTAAAT 20939 |||||||||||| ||||||||||| Sbjct 13022 GAGATACTGAGCGTGGTTGTAAAT 12999 Score = 114 bits (126), Expect = 3e-21 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 22501 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 22560 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11414 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 11355 Query 22561 TTGGTTAC 22568 |||||||| Sbjct 11354 TTGGTTAC 11347 >seq3699 Length=658 Score = 89.7 bits (98), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38713 TGGTCAGCTAATCATTACCACAATAAAGCCATTGAATACAAAAAACAGCGCGACGAAAAC 38772 ||| | | ||||||||||| |||| |||||| |||||| ||||||||| |||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 38773 GCTATGGCATTAGATTCGGCTATGGCGACGATCTCTGATATGCAGAAGCGTCAACGTGAC 38832 || | | | | | ||| | ||| | || |||| ||||||| ||| || ||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 38833 GTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 38891 || || | ||| |||| | ||| || |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 38892 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 38922 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132755743356120