Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019720.1 Length=44120 Score E Sequences producing significant alignments: (Bits) Value seq1335 392 9e-105 seq1340 277 5e-70 seq3699 178 4e-40 seq4808 104 7e-18 seq2982 89.7 1e-13 >seq1335 Length=14169 Score = 392 bits (434), Expect = 9e-105 Identities = 237/250 (95%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 23926 AAAAAACCGCCATCAGGCGGTTTTGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 23985 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 11406 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 11347 Query 23986 GTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTGAAGTCCTC 24045 |||||||||||||||||||||||| | |||||||||||||||||||||| ||| || ||| Sbjct 11346 GTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGCTGATGTTCTC 11287 Query 24046 TGCTTCGATAACCCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGAAAGTGCAT 24105 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 11286 GGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGGAAGTGCAT 11227 Query 24106 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGA 24165 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 11226 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCA 11167 Query 24166 GTGCGAGGAT 24175 |||||||||| Sbjct 11166 GTGCGAGGAT 11157 >seq1340 Length=18762 Score = 277 bits (306), Expect = 5e-70 Identities = 552/807 (68%), Gaps = 22/807 (3%) Strand=Plus/Minus Query 7608 TTTGACGGGCGCCCTGTTTTTCTTGAAGAGCAGGATCTCCCTGCCGTGGCTGTATACCTT 7667 ||||| || ||||| | | || |||| ||| |||| | || || | || || || || Sbjct 11023 TTTGATGGTCGCCCCGCTGTTTTTGATGAGGCGGATTTTCCGGCAATTGCCGTTTATCTC 10964 Query 7668 TCTGACGCGGAGTACACCGGCGACTCGCTTGACGAAGATTCGTGGCAGGCGGTTGTTCAC 7727 | | ||| || ||||| ||||| ||| ||| ||| | |||||||||| | || Sbjct 10963 ACCGGCGCTGAATACACGGGCGAAGAGCTGGACAGTGATACCTGGCAGGCGGAGCTGCAT 10904 Query 7728 ATCGAGGTATTTCTTAAAGCCTCC--AGC--CCCGACAGCGCGCTTGATTCCTGGATGGA 7783 ||||| || || || |||| | || || || | ||| ||||| |||||||| Sbjct 10903 ATCGAAGTTTTCCT----GCCTGCTCAGGTGCCGGATTCAGAGCTGGATTCGTGGATGGA 10848 Query 7784 AGAGAAAGTGTATCCGGCAATGGCCTTCATCCCGGGTCTGACCGAACTGGTCG--AG-AC 7840 | ||||||| ||| | ||||||| ||| | || || || || | Sbjct 10847 GTCCCGGATTTATCCGGTGATGAGCGATATCCCGGCACTGTCAGATTTGATCACCAGTAT 10788 Query 7841 GTTCACCCCGCAG-GGTTATGACTATCAGCGGGATGATGAAATGGCCACCTGGGGTTCAG 7899 | | || || || |||||||| | ||| || ||||| || | ||| |||| | Sbjct 10787 GGTGGCC----AGTGGCTATGACTACCGGCGCGACGATGATGCGGGCCTGTGGAGTTCTG 10732 Query 7900 TCGATTTCACGTACTTAATCACCTATTCAATTTAAGAGGTACTTATGCCTACTCCAAACC 7959 |||| | ||||| | || |||||| ||| | |||| ||||||| ||||| | Sbjct 10731 CCGATCTGACGTATGTCATTACCTATGAAATGT--GAGGACGATATGCCTGTACCAAATC 10674 Query 7960 CGCTGGCCCCCGTGAAAGGTGCCGGTACCACACTCTGGCTTTACACCGGAACGGGCAACG 8019 | || |||||||||||||| ||||| || ||| |||| | ||| | ||| || Sbjct 10673 CAGCAATACCGGTGAAAGGTGCCGGAACCACCCTGTGGGTTTATAACGGGAGCGGCGACC 10614 Query 8020 CTTTCGCTAACCCACTCTCGGATATCGACTGGAACCGCCTGGCGAAAATTAAAGAGCTGA 8079 ||| || ||||| || || || | |||||| || ||||| ||| ||||||| |||| Sbjct 10613 CTTATGCGAACCCGCTTTCAGACGTTGACTGGTCGCGTCTGGCAAAAGTTAAAGACCTGA 10554 Query 8080 CGCCGGGCGAAATGACCGCAGAATCGTATGACGACACTTACCTCGACGACGAGGATGCCG 8139 |||| |||||| ||||||| || || |||||||||| ||| ||||| || || ||||| | Sbjct 10553 CGCCCGGCGAACTGACCGCTGAGTCCTATGACGACAGTTATCTCGATGATGAAGATGCGG 10494 Query 8140 ACTGGAACGCGACGGCCCAGGGGGCAAAATCTGCTGGCGATACCTCGTTCACCCTCGCCT 8199 |||||| |||||| | |||||| ||||| || || |||||| ||||| || || | Sbjct 10493 ACTGGACCGCGACCGGGCAGGGGCAGAAATCCGCCGGAGATACCAGCTTCACGCTGGCGT 10434 Query 8200 GGAAGCCGGGCGAAGAAGGGCAAAAAGACCTTGTCGCATGGTTTATTGATGGCTCAGTA- 8258 ||| ||| || || | ||||| | | || | || ||||||| ||| || | | || Sbjct 10433 GGATGCCCGGAGAGCAGGGGCAGCAGGCGCTGCTGGCGTGGTTTAATGAAGG-TGA-TAC 10376 Query 8259 -CGTTATTACAAAATCAAATACCCGAACGGTACCGTCGACGTTTTCTGTGGCTGGTGCAG 8317 ||| || |||||| | ||||||||| || ||||| || ||| |||||||| ||| Sbjct 10375 CCGTGCCTATAAAATCCGCTTCCCGAACGGCACGGTCGATGTGTTCCGTGGCTGGGTCAG 10316 Query 8318 CAGCCTGGGTAAAGCCATTCCGGCAAAAGAGGTCATTACCCGTACAGCGAAAATCACCAA 8377 ||| | ||||| || | |||| || || || || |||||||| | ||| ||||||| Sbjct 10315 CAGTATCGGTAAGGCGGTGACGGCGAAGGAAGTGATCACCCGTACGGTGAAGGTCACCAA 10256 Query 8378 TACCGGCAAGCCGGAACTGGCAGAAGA 8404 | ||| ||| | |||||||||| Sbjct 10255 TGTGGGCCGTCCGTCAATGGCAGAAGA 10229 Score = 134 bits (148), Expect = 4e-27 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 12346 GGCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCACCGCGGGGAA 12405 || || ||||| || ||||||||| || |||||||| || || |||||||| || ||| Sbjct 6879 GGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAA 6820 Query 12406 TTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTATCGCCTGATG 12465 || |||||||| || || |||||||||| || ||||||| |||||||| || |||||| Sbjct 6819 TTTGTCTTCACAAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTCTACCGGCTGATG 6760 Query 12466 CGCGGGTATGCCTCGGGTGGTCTGGTCGG 12494 ||||| |||||| | |||||| ||||| Sbjct 6759 CGCGGCTATGCCACCGGTGGTTATGTCGG 6731 Score = 131 bits (144), Expect = 5e-26 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 11569 CTTCTCACCCTTCAGGCCCAGCTTAAAACGCTCGAGCAGCATATCAGCGTAAACGACGTT 11628 || || || |||||||| | || ||||| ||| ||||| | | | ||| || Sbjct 7662 CTGCTGACGCTTCAGGCTGAACTCCGGACGCTGGAGAAGCATGCCGGAGCAAATGAGAAA 7603 Query 11629 ATCAGCAAACAGCGTCAGGATCTCTGGCAGACTGAAAATCAGTTCACCGTTCTGCAGGAG 11688 |||||| | ||||| | |||| | ||| || | || | ||||||| | || ||| ||||| Sbjct 7602 ATCAGCCAGCAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTACTGGAGGAG 7543 Query 11689 GCCGCGGGGCGTCGTCAGCTTACGGCGCAGGAAAAATCACTGCTGGCGCACAAGGAAGAA 11748 || ||| ||||| ||||| | || ||||| ||||| ||||||||||| || || || Sbjct 7542 GCGGCGCAACGTCGCCAGCTGTCCGCACAGGAGAAATCCCTGCTGGCGCATAAAGATGAG 7483 Query 11749 ACGCTCGAGTACAAGCGGCAGCTGGCCGACCTGGGAGATAAGGTT 11793 ||||| |||||||| || |||||||| | || || || |||||| Sbjct 7482 ACGCTGGAGTACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTT 7438 Score = 127 bits (140), Expect = 6e-25 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 9106 GTTACCGCGGAAAAGCCCTTGCCAGCGAGCTGAAGTTTGTCCTGAATCTGGCGCGCGAGT 9165 ||| | |||| |||| | | | | ||||||| |||| |||||| |||||||||||| Sbjct 9543 GTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGAGTTTTGCCCTGAAACTGGCGCGCGAGA 9484 Query 9166 TCGGTCGACCCGACTGGCGCGCCATGCTGGCTGGGATGACTTCCAGTGAACTGGGCGACT 9225 | || |||||||||||||| |||||||| || |||||| | |||| || | ||||| Sbjct 9483 TGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCACGGAGTATGCCGACT 9424 Query 9226 GGCACCTGTTCTACCGGGAGCATTATTTTCAGGACGCGCAGCTCGATGCGCATTTCTCCG 9285 |||||| || ||| | ||||||||||| || | | ||| ||| ||| || |||| Sbjct 9423 GGCACCGCTTTTACAGTACCCATTATTTTCATGATGTTCTGCTGGATATGCACTTTTCCG 9364 Query 9286 GGCTGCTTTATTCCATCTCCACTCTTTTCTTCCGCGATCCGGA 9328 ||||| || || | || || || ||| |||||||||| Sbjct 9363 GGCTGACGTACACCGTGCTCAGCCTGTTTTTCAGCGATCCGGA 9321 >seq3699 Length=658 Score = 178 bits (196), Expect = 4e-40 Identities = 109/116 (94%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42085 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 42144 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 42145 TGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAGAACAGCGCGATAA 42200 ||||| |||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAA 489 >seq4808 Length=2437 Score = 104 bits (114), Expect = 7e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 22061 TCCTATTATCGGCACCATTTAAATCAATGAGTTACCTCGCATTTAAGTAAACCACGTTCT 22120 ||||||||||| ||||||| ||||||| |||||||| | |||||| || |||||||| | Sbjct 138 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 81 Query 22121 CCTCTTGTGCCGTATTTGTGCCATTG 22146 |||| ||||||||||||||||||||| Sbjct 80 CCTCCTGTGCCGTATTTGTGCCATTG 55 >seq2982 Length=1456 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 22032 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 22083 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141049377648216