Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq915 327 3e-85 seq1728 138 3e-28 seq2008 132 1e-26 >seq915 Length=38681 Score = 327 bits (362), Expect = 3e-85 Identities = 401/545 (74%), Gaps = 2/545 (0%) Strand=Plus/Plus Query 35177 CGCGCTGGTTTCAGCCAGTCACCGATGCGATGAAAGAATTCGGCATT-ACCAAGCCGGTA 35235 ||||||||| || || |||||| || |||||||| || ||||| | ||| ||| | Sbjct 37515 CGCGCTGGTATCTGCATATCACCGCGGCAATGAAAGAGTTTGGCATCGAACAA-CCGCTG 37573 Query 35236 GACCAGGCCATGTTCATTGCGCAGGTTGGGCATGAATCAGCTGGCTTCACTCTCCTGGTG 35295 ||||||| ||||| || |||||||| |||||||| || | ||||| || | ||| | Sbjct 37574 CACCAGGCGATGTTTATCGCGCAGGTCGGGCATGAGTCTACCGGCTTTACCCGGCTGCAG 37633 Query 35296 GAGAGCTTCAATTACCGGATTGCCGCACTAGTTAACTTCATTCGTGCAGGACGCCTTACC 35355 || | |||||| ||| | | || | || | ||| | ||| | || ||||| || Sbjct 37634 GAAAACTTCAACTACAGCGTAGCAGGGCTGGCAGGTTTCGTCCGTACCGGGCGCCTAACT 37693 Query 35356 GCAGAACAGGCAAACGCGTTAGGCCGCCGCCCTGAAGAACGGACATTACCGATTGAGCGC 35415 | ||||| |||||| | ||||| || ||| |||| | |||||| | |||||| Sbjct 37694 CAGGGTCAGGCTAACGCGCTGGGCCGTCGTGCTGGTGAACCATCGTTACCGCTGGAGCGC 37753 Query 35416 CAGCGAGCCATTGCGAACCTGGTATACAGCAAACGCATGGGTAACAACGCACCCGGCGAC 35475 ||||| || || || |||||||| ||||||||| | ||||| ||||||| || ||| Sbjct 37754 CAGCGTGCGATCGCCAACCTGGTGTACAGCAAAAGAATGGGGAACAACGGTCCGACTGAC 37813 Query 35476 GGCTGGTTATACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAACAACTACCGTGAT 35535 |||||||| |||| ||||| |||||||||||||| ||||| || |||||||| || || Sbjct 37814 GGCTGGTTTTACCTCGGGCGCGGGCTTATCCAGATCACCGGGCTGAACAACTATCGCGAC 37873 Query 35536 TGTGGAAACGGCCTGAAAGTTGATCTGGTTAAGCAACCTCAGTTGCTCGCTGAAGACGTA 35595 || || || |||||||| || |||||||||||||| ||| || |||| || | |||| | Sbjct 37874 TGCGGCAATGGCCTGAAGGTGGATCTGGTTAAGCAGCCTGAGCTGCTGGCGCAGGACGAA 37933 Query 35596 TACGCGGCAAGAAGTGCGGCATGGTTCTTTGTCACTAAGGGCTGCCTTAATCATTCTGGC 35655 |||||||| | || ||||| |||||||| | || || |||||| | || | | ||| Sbjct 37934 TACGCGGCCCGCAGCGCGGCGTGGTTCTTCGCAACCAAAGGCTGCATGAAGTACACCGGC 37993 Query 35656 GACCTGATGCGCGTGACGAAGATTATCAACGGCGGAACGAACGGACTGGAAGATCGTCGC 35715 |||||| ||||||| ||| |||| ||||| || || |||||| | || || || || Sbjct 37994 GACCTGGTGCGCGTCACGCAGATCATCAATGGTGGGCAGAACGGCATCGACGACCGGCGT 38053 Query 35716 GCTCG 35720 || || Sbjct 38054 GCGCG 38058 Score = 223 bits (246), Expect = 9e-54 Identities = 189/233 (81%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 23050 ACCGGCATCGGCACTCGGATAACCAGCTTTTTGAGTCTGTCTATCTCAGCTGCGTGCTCC 23109 |||||||||||||| |||||||||||| | |||| | |||| ||| |||| |||||| Sbjct 10895 ACCGGCATCGGCACGCGGATAACCAGCCTGCGGAGTTCGGCTATTTCATCTGCCTGCTCC 10836 Query 23110 AGCGCGATATCCTTCCAGTCCTGCGCTTCGGCCATCCACCAGGCTACATCTGCTTTAAGG 23169 | | | | | | |||| ||||| | ||||||| || || || ||||||||| Sbjct 10835 ATGACTCTGGCGTACAGGTCCGAGGCTTCACCTTTCCACCATGCCACGTCGGCTTTAAGG 10776 Query 23170 CGGCGCAAGCGCCGCTGTTTGAGTTTGCTCACCATGGCAGCCACCCAAGTTGCTGCAGGG 23229 ||||||| |||||||||||| ||||||||||||||||||||||||| | |||||| || | Sbjct 10775 CGGCGCAGGCGCCGCTGTTTAAGTTTGCTCACCATGGCAGCCACCCCATTTGCTGAAGTG 10716 Query 23230 CACCGATTGCCAGCAGCACGAACATAATCGCGTCGAATGGGTTAGGCATGGCG 23282 | ||||||||||||||||||||||| | | |||||||||||||||||||| || Sbjct 10715 CGCCGATTGCCAGCAGCACGAACATCACCACGTCGAATGGGTTAGGCATGTCG 10663 Score = 150 bits (166), Expect = 5e-32 Identities = 137/170 (81%), Gaps = 11/170 (6%) Strand=Plus/Plus Query 27663 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGCTGGTGAAGCGTC---TCTGGCT 27719 ||||||||||||||||||||||||||||||||||||| |||||| |||| || || Sbjct 14875 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGATGGTGAGTCGTCATGTCGTGCA 14934 Query 27720 GTCGTACACAACTGTCTTGCACATTCCGGCTACCCGCT----GGATCTGGATACTGAAAG 27775 | | | || | ||||||||||||||||||||||| |||| ||| || ||| Sbjct 14935 TACCGATAACACAGACTTGCACATTCCGGCTACCCGCTCAGGGGATAAGGAAAC--CAAG 14992 Query 27776 GAATCC--ACGGACCGCTGCGGCACATGTGCCATATACCGTACTGCTTAC 27823 ||| || |||||||||||||||||||||||||||||||||||||| || Sbjct 14993 GAACCCCGCCGGACCGCTGCGGCACATGTGCCATATACCGTACTGCTCAC 15042 Score = 111 bits (122), Expect = 4e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 24797 TCCAGCTCAGCAATCCGCTTCTCTGCGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTT 24856 |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| Sbjct 9501 TCCAGCTCAGCAATCCTCTGGTCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTG 9442 Query 24857 GCGGGGTTGGCTGCGGCAATAAAT 24880 ||||| ||||||||||| ||| || Sbjct 9441 GCGGGTTTGGCTGCGGCGATATAT 9418 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 24048 TCGGGCAACTTGTAAGCCGTCGTTACAGGTTCGGCACCCTGAAGCATGGCGG 24099 ||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 10125 TCGCGCAACTTGCAAGCCGTCGTTACAGGTTCGGCACCCTGAAGCATGGCGG 10074 >seq1728 Length=3184 Score = 138 bits (152), Expect = 3e-28 Identities = 107/123 (87%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 21482 ATTTAAAATCCCTCGGCGTTCGCGCTGTGTGGGTTCAAGTCCCACTCCGGGTACCATGGG 21541 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 640 ATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATGGG 699 Query 21542 AAA-ACTAGAATAAAATCAATG--ATAAGCAGTGTCGTATAAACCACCGAAAGGTGGttt 21598 ||| | ||||| |||||| | |||||||||||||| |||||||| |||||||| Sbjct 700 AAACATCAGAAT--AATCAAAGCAATAAGCAGTGTCGT-GAAACCACCTTCGGGTGGTTT 756 Query 21599 ttt 21601 ||| Sbjct 757 TTT 759 >seq2008 Length=9006 Score = 132 bits (146), Expect = 1e-26 Identities = 339/506 (67%), Gaps = 14/506 (3%) Strand=Plus/Plus Query 12194 CGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTGCAAACTTCGGTTCGGTGA 12253 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || ||||| || Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12254 AAATAACGAGCTCTCGTTTGGTGGGTTCCCTGGCACGTCTTTGAT---CAGGAGCTGAT- 12309 | ||||| ||||| || || || ||||| | | ||| |||| | |||||||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12310 ATGCGGCAGAAAACCATTGATGCCATTATGGCGCATGCTGCAGCTGAATATCCTCGCGAG 12369 ||||| || | | ||||| || || ||||||||| ||||| || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12370 TGCTGCGGCGTGGTG-GCGCAGAAAAGC-CGTGTTGAACGTTATTTCCCGTGCCGCAATC 12427 |||||||| || || || | | || | | ||| || ||||||||||| || Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAA--GTACTTCCCGTGCCGGAACA 4044 Query 12428 TTGCCACGGAACCGGAGGACAATTTTGTCCTCTGCCCGGAAGATTACGCAGCTGCTGAGG 12487 | |||||||| ||| | || | ||| || || || || ||||| || || |||| Sbjct 4045 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 4104 Query 12488 ACTGGGGCACGGTGATCGCCATCGCTCACAGTCACCCTGATGCCACGACACAGCCG--AG 12545 || |||| ||||||| || | |||| ||||| || ||||| | | |||| | Sbjct 4105 ACCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCAC 4164 Query 12546 CGAACTGGATAAAGCGCAATGCGATGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCC 12605 || || || || ||||| || || || |||||||| ||| || ||||| Sbjct 4165 CGCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCC 4222 Query 12606 GGAGGGTGATTTACGCACCATCCAGCC-GCGTGGAGAACTGCCGTTGCTGGAGCGTCCGT 12664 ||||| ||||| || || ||| ||| || | || || ||| |||| |||| |||| Sbjct 4223 CGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGT 4281 Query 12665 TTGTGCTTGGACACTTCGACTGCTGG 12690 |||| | ||| || ||||||||| Sbjct 4282 TTGTACATGGCGCCTGGGACTGCTGG 4307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127959386178708