Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq3699 199 1e-46 seq2008 167 6e-37 >seq3699 Length=658 Score = 199 bits (220), Expect = 1e-46 Identities = 207/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 37705 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 37764 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 37765 TGGGCTGTTAATCATTACCGTGATAACGCCATCTCCTACAAAGAGCAGCGCGATAAA--- 37821 |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 37822 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGTCAACGTGAT 37863 |||| | | | | || |||| ||||||| ||| || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 37864 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 37922 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 37923 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37953 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq2008 Length=9006 Score = 167 bits (184), Expect = 6e-37 Identities = 350/508 (69%), Gaps = 18/508 (4%) Strand=Plus/Plus Query 12624 CGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12683 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12684 AAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGAT- 12739 | ||||||||||| || || || ||||| | | ||| |||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12740 ATGCGTCAGAAAACCATAGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCTTGAG 12799 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12800 TGTTGCGGCGTGGTGGCG-CAGAAAAGCCG-CGTTGAACGTTATTTCCCGTGCCGGAATC 12857 || ||||| || || | | | | || | || ||| || |||||||||||||| Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAG--TACTTCCCGTGCCGGAACA 4044 Query 12858 TTGCCGCGGCGCCGGAGGACAATTTTGTCCTTTGCCCCGAAGACTACGCAGCTGCTGAGG 12917 | ||| ||| |||| | || | ||| ||| || || |||||||| || || |||| Sbjct 4045 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 4104 Query 12918 A-CTGGG-GAACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCAGCCG-- 12973 | ||||| ||| ||||||| || |||||| ||||| |||||||| | | |||| Sbjct 4105 ACCTGGGCGAA--GTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTC 4162 Query 12974 AGCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGG 13033 | || || || || ||||| || || || |||||||| ||| || ||| Sbjct 4163 ACCGCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGG 4220 Query 13034 CCGGAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCC 13092 || ||||||||||| || || ||| ||| || | || || ||||||||| |||| || Sbjct 4221 CCCGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCC 4279 Query 13093 GTTTGTGCTTGGACACTTCGACTGCTGG 13120 |||||| | ||| || ||||||||| Sbjct 4280 GTTTGTACATGGCGCCTGGGACTGCTGG 4307 Score = 98.7 bits (108), Expect = 3e-16 Identities = 197/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 15728 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15787 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15788 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15847 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15848 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15907 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15908 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15967 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 15968 TGACCGCGTAGCTGATGCAACACCAGGTGATCGCCTTATTCTCAACCTTCCC 16019 ||||||| | | || | ||| ||||| || || || |||||||| ||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCC 8936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128362548956796