Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019768.1 Length=41468 Score E Sequences producing significant alignments: (Bits) Value seq1335 3061 0.0 seq2008 141 2e-29 seq3699 89.7 1e-13 >seq1335 Length=14169 Score = 3061 bits (3394), Expect = 0.0 Identities = 1768/1814 (97%), Gaps = 1/1814 (0%) Strand=Plus/Minus Query 21215 GTTTGATGACAAAAAATTAGCGCAAGAGGACAACAAA-TCACCTTGCGCTAATGCTCTGC 21273 || || ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct 12986 GTGTGTTGACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGT 12927 Query 21274 TACAGGTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGTGTTTTG 21333 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 12926 TACAGGTCACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTG 12867 Query 21334 TCGCATTATGTAGTCTATTTTTTAGACTAAATATATTGTAATGCATTGATATTAATGGTT 21393 | |||||||| ||||||||||||||||| ||| ||| ||| | ||||||||||| ||| Sbjct 12866 TAGCATTATGCAGTCTATTTTTTAGACTGAATCAATTATAAGCCGTTGATATTAATTGTT 12807 Query 21394 TTTAATGTTTCACGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTA 21453 |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 12806 TTTACCGTTTCACATTCAACTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTA 12747 Query 21454 TCAATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAA 21513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12746 TCAATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAA 12687 Query 21514 TTTTGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTAT 21573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12686 TTTTGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTAT 12627 Query 21574 GCCCGAGAAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACA 21633 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 12626 GCCCGAGAAGATGTTGAGCAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACA 12567 Query 21634 AACTGCGCAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTC 21693 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 12566 AACTGCGCAACTCGTGAAAGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTC 12507 Query 21694 GTGCGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATG 21753 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 12506 GTGCGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATG 12447 Query 21754 CAATTATGGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATA 21813 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 12446 CAATTATGGTTTCTCCGCCAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATA 12387 Query 21814 TCCCGAGAGCATCAACATGCAATGTTGTAGGTATGGCAATTTTTACGCCTGTTTTGCTTT 21873 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 12386 TCCCGAGAGCATCAACATGCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTT 12327 Query 21874 GCTCGACATAAAGATAGCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAA 21933 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 12326 GCTCGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAA 12267 Query 21934 CTCGTTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATT 21993 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 12266 CTCGCTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATT 12207 Query 21994 CTGCTGCTTGATAAATTTTCAGGTATTCGTCAGCTGTAAGTCTTGATCTCCTTACCTCTG 22053 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 12206 CTGCTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTG 12147 Query 22054 ATTTTGCTGCGCGAGTGGCAGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATTGCCT 22113 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 12146 ATTTTGCAGCGCGAGTGGCTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCT 12087 Query 22114 CTCGGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGT 22173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12086 CTCGGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGT 12027 Query 22174 CTATGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCAT 22233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12026 CTATGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCAT 11967 Query 22234 CAGGCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCT 22293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11966 CAGGCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCT 11907 Query 22294 TGATTCCTCTGCTGGCCAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGG 22353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11906 TGATTCCTCTGCTGGCCAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGG 11847 Query 22354 AATTATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGCCCTGAAAATAACTCAA 22413 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 11846 AATTATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAA 11787 Query 22414 TGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTT 22473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11786 TGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTT 11727 Query 22474 TACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGATTAGGGG 22533 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 11726 TACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGG 11667 Query 22534 GTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTA 22593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11666 GTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTA 11607 Query 22594 CCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTT 22653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11606 CCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTT 11547 Query 22654 CCATCCTTAACCGGAGGTGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCA 22713 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 11546 CCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCA 11487 Query 22714 AGGCTTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAG 22773 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 11486 AGGCTTCTTGGGCGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAG 11427 Query 22774 TCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGTTTGGTGTTCTTTCAGTTCT 22833 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 11426 TCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCT 11367 Query 22834 TCAATTCGAATATTGGTTACGTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCA 22893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11366 TCAATTCGAATATTGGTTACGTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCA 11307 Query 22894 TAGCAGTCGTTGATGTCCTCTGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCA 22953 ||||||||| |||||| ||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 11306 TAGCAGTCGCTGATGTTCTCGGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCA 11247 Query 22954 CCTGTGACTCGGAAGTGCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCA 23013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11246 CCTGTGACTCGGAAGTGCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCA 11187 Query 23014 GATAAAAGAAACCC 23027 ||||||||||| || Sbjct 11186 GATAAAAGAAATCC 11173 >seq2008 Length=9006 Score = 141 bits (156), Expect = 2e-29 Identities = 342/510 (67%), Gaps = 22/510 (4%) Strand=Plus/Plus Query 12633 CGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12692 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12693 AAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGAT- 12748 | ||||||||||| || || || ||||| | | ||| |||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12749 ATGCGTCAGAAAACCGTCGATGAGATTATGGCGCATGCTGCAGCTGAATATCCTCGCGAG 12808 ||||| || | | | | | | ||| ||||||||| ||||| || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12809 TGTTGCGGCGTGGTGGCG-CAGAAAAGCCGT-GTTGAACGTTATTTCCCGTGCCGGAATC 12866 || ||||| || || | | | | || | | ||| || |||||||||||||| Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAG--TACTTCCCGTGCCGGAACA 4044 Query 12867 TTGCCGCGGCGCCGGAGGACAATTTTGTCCTTTGCCCGGAAGATTACGCAGCTGCTGAGG 12926 | ||| ||| |||| | || | ||| ||| || || || ||||| || || |||| Sbjct 4045 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 4104 Query 12927 ACTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAA------CGCAAC 12980 || ||| ||||||| || |||||| ||||| |||||||| | || || Sbjct 4105 ACCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCAC 4164 Query 12981 CGAGCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCACATCGTGAGCT 13040 || ||| ||| || ||||| || || || ||||||||||| || | Sbjct 4165 CGCACGACCTG------GCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGT 4218 Query 13041 GGCCTGAGGGGGATTTGCGCACCATCCAGCC-GCGTGGGGAACTGCCGCTGCTGGAGCGT 13099 |||| |||||||||||||| || ||| ||| || | | || ||| ||||| |||| Sbjct 4219 GGCCCGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGG 4277 Query 13100 CCGTTTGTGCTTGGCCACTTCGACTGCTGG 13129 |||||||| | |||| || ||||||||| Sbjct 4278 CCGTTTGTACATGGCGCCTGGGACTGCTGG 4307 Score = 93.3 bits (102), Expect = 1e-14 Identities = 195/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15737 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15796 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15797 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15856 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15857 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15916 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15917 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15976 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 15977 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTACC 16027 ||||||| | | || ||| ||||| || || || |||||||| || Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 8935 >seq3699 Length=658 Score = 89.7 bits (98), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39169 TGGTCAGCTAATCATTACCACAATAAAGCCATTGAATACAAAAAACAGCGCGACGAAAAC 39228 ||| | | ||||||||||| |||| |||||| |||||| ||||||||| |||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 39229 GCTATGGCATTAGATTCGGCTATGGCGACGATCTCTGATATGCAGAAGCGTCAACGTGAC 39288 || | | | | | ||| | ||| | || |||| ||||||| ||| || ||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 39289 GTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 39347 || || | ||| |||| | ||| || |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 39348 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 39378 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132563761080840