Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq915 370 3e-98 seq2439 170 5e-38 seq4239 86.0 2e-12 >seq915 Length=38681 Score = 370 bits (410), Expect = 3e-98 Identities = 527/736 (72%), Gaps = 13/736 (2%) Strand=Plus/Plus Query 769 TGGCAGGCTGACGCATTCAAGGAGATCCGCGATCACCTACGCAGT----GAAAACAGGTT 824 |||||||| ||||||||| ||||| ||||||||||| |||| | || || Sbjct 12753 TGGCAGGCAGACGCATTCCGCGAGATACGCGATCACCT--GCAGAACCCGGCGACGCGTC 12810 Query 825 TG-AGCCATTGCTGCTCGCCAGGGCATCAGGCCACGGTATCGGCAAATCGGCCTTCATCA 883 |||| ||| |||| ||| | ||||| |||||||| |||||||| || || |||||| Sbjct 12811 ACCAGCCGTTGATGCTGGCCCGCGCATCCGGCCACGGCATCGGCAAGTCAGCTTTCATCT 12870 Query 884 GCATGCTCATCGACTGGGCAGAGAGCACAGCCGTAGACACCCGCGTCGTCGTGACGGCCA 943 ||||| || |||||| | || || ||| | || || ||||| |||| Sbjct 12871 CGATGCTGATTAACTGGGGCATGTCGACCTGCGAGGACTGCAAGGTGGTGGTGACCGCCA 12930 Query 944 ACACCGAAACACAGCTGCGCACCAAGACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCA 1003 ||||||| | ||||||||||||||||| |||||||| || ||||||| || || Sbjct 12931 ACACCGACAACCAGCTGCGCACCAAGACATGGCCGGAAATCATCAAATGGT--CGAATCT 12988 Query 1004 GCCTGTTCTCGCAC---TGGTTCAAGACCACGGCCACATCGATCGTTTCCCTCGACCCCA 1060 | || | | || | ||||||| ||| ||||| |||| | ||||| Sbjct 12989 GGCTAT-CACGAAAGAGTGGTTCACCTGCACCGCCACGGCGATGTACAGCAATGACCCAG 13047 Query 1061 AACACTCCGCATCCTGGCGCGCCGACGCCGTGCCATGGTCCGACACCAACACCGAGGCAT 1120 ||| | |||||| || ||||| | || ||||| || |||||| ||||| | Sbjct 13048 GCCACGACAAGCGCTGGCGAGCTGACGCAATACCGTGGTCTGAGCACAACACAGAGGCGT 13107 Query 1121 TCGCCGGCCTGCACAACGAGGGCAAGCGCATCATCCTGATCTTCGATGAGGCTTCGAACA 1180 ||||||| |||||||||||| | ||||| |||||| || | |||||||| || || |||| Sbjct 13108 TCGCCGGGCTGCACAACGAGCGTAAGCGTATCATCGTGGTATTCGATGAAGCGTCCAACA 13167 Query 1181 TCAGCGACAAGGTGTGGGAAGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCA 1240 | || |||||||||||| ||||| ||||||||||| ||||| |||| || || | Sbjct 13168 TTGCAGATCTGGTGTGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTA 13227 Query 1241 TATGGGTGGCATTCGGCAACCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCA 1300 | |||||||| || || ||||||||||| ||||| || || |||||||| |||||||||| Sbjct 13228 TCTGGGTGGCGTTTGGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCA 13287 Query 1301 AGTTCAAGCACCGGTGGAAGTGCAAGCAGATCGATGCCAGGACTGTTGAAGGCACCAACA 1360 ||| ||||||||| ||||||||| |||||| || | | || || |||||||| |||| Sbjct 13288 AGTACAAGCACCGCTGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGCACAAACA 13347 Query 1361 AGACCCAGCACCAGAAGTGGATTGATGACTGGGGTGAAGATTCCGACTTCGTCCGCGTCC 1420 || |||| ||||| ||| |||| |||| || ||||| ||||||||| |||| Sbjct 13348 AGCAGCAGCTGCAGAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCC 13407 Query 1421 GTGTGCGCGGCATGTTCCCGAGGGCTTCCGCATTGCAGCTGATACCAACTGACTGGGTGG 1480 | ||||| || || ||||| || || | | | ||| | || ||||| | | | Sbjct 13408 GCGTGCGGGGGATCTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAG 13467 Query 1481 CCGAGGCCATGAAGCG 1496 ||||||||||||||| Sbjct 13468 ACGAGGCCATGAAGCG 13483 Score = 95.1 bits (104), Expect = 3e-15 Identities = 176/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 6144 AACGTGATCGACGCTGGCGGTACCGGCACCGACAACTCGTCCATCTGGCTGATCGGCTGG 6203 ||| | ||||||||||||||||||||||| || ||| | || ||||||||| | | ||| Sbjct 18733 AACATTATCGACGCTGGCGGTACCGGCACTGATAACACCTCTATCTGGCTGGTGGTATGG 18792 Query 6204 GGCGCCAACACCATCCACGGCATCTACCCGAAAGGCTCGCAGGCAGGCCT---GATCCAC 6260 || | |||||| | || ||||||| ||||||||| | | || ||||| || || Sbjct 18793 GGTGAAAACACCGTTCATGGCATCTTCCCGAAAGGGCAGAAAGCTGGCCTACAGACTCAG 18852 Query 6261 AACGACCTAGGCGAGATTGACGCGTTCGATGCCAG-CATG--AACCGCTTCCGCGCCTAC 6317 | |||| || ||| | | |||||||||| || || | || | ||| Sbjct 18853 A---ACCTTGGTGAGCAAACCCTGGTCGATGCCAGTGGTGGTAA---ATACCAGGGCTAT 18906 Query 6318 GGCGACCAGTACCAATGGAAGGCCGGTATTGCCGTGCACGACTGGCGCTACGCCGTTCGT 6377 | ||| ||| ||||| | |||| | || ||| ||||||||||||| || || Sbjct 18907 CGTACCCATTACAAATGGGATAACGGTCTGGCACTGCGTGACTGGCGCTACGTTGTGCGC 18966 Query 6378 ATCGCAAACATCGA 6391 ||||| |||||||| Sbjct 18967 ATCGCCAACATCGA 18980 >seq2439 Length=2533 Score = 170 bits (188), Expect = 5e-38 Identities = 288/410 (70%), Gaps = 19/410 (5%) Strand=Plus/Minus Query 31512 GGTGGTGATGTTCAGCAGGGCGCACATGACGTAGCGCTTGCCGTAGCTGGTGGTCGAGCC 31571 ||| |||||||||||||| || ||||| |||||||||||||| ||| | || | ||||| Sbjct 1553 GGTCGTGATGTTCAGCAGCGCACACATCACGTAGCGCTTGCCATAGGTAGTCGATGAGCC 1494 Query 31572 GACGGCCTGGACGGCGTTCTTGCTGCCGCT---GGTGTCGAGCGGGAGAAGCATGGTTGT 31628 || ||||| ||| |||| || || | | | || | ||| || |||||| || Sbjct 1493 AACAGCCTGTACGTCGTT---GCGACCTTTTCCGATATCAATCGGCAGGCTCATGGTGGT 1437 Query 31629 CTCTTCCCGGTGGCCGGCGCGGTGCATCAGGATGCCAGTCACGCTAAGCCCGGCCTGGGC 31688 | || |||||||| | |||||||||| ||| ||||| || || | | | | || Sbjct 1436 TTGCTCGCGGTGGCCACCCCGGTGCATCAAGATTCCAGTGACACTGATCGCCTTTTCAGC 1377 Query 31689 GTGCTCGACCTTGAAGCTGATGGCGAACCCGTGGGCCTTCATGATCGGCTTCACCACGTC 31748 || || ||||||||| ||||||| |||||||| || |||||||||||||| || Sbjct 1376 GTTTTCCACCTTGAAGGTGATGGCAAACCCGTGCTGCTGCATGATCGGCTTCAAGGTGTG 1317 Query 31749 GCTGATGTCTTCAAGAGTTGCGTAACGGATGGTGCC---GTGACCCTT---GGCGCGCTC 31802 |||||| || || || ||||| ||| | | || ||| || ||| | || Sbjct 1316 TGTGATGTGGTCGAGCGTGGCGTA--GGA-GTTTCCTGTGTGTAGGTTAACGGCACCTTC 1260 Query 31803 TGCGATGGTTGGGATCTCGCACTGCATTTCGGCCATGGCGGCGTTGAACTGTTCTTGGGC 31862 | || ||||| | |||||||||||||||||| ||||| ||||| || | || Sbjct 1259 GAACACAGTCGGGATGTTGCACTGCATTTCGGCCATTGCGGCATTGAAAGCTTGCTCAGC 1200 Query 31863 --GCTGCGAGCCTGCATGCGCTCGTGCATCTGCATCAGGCGCTCGATCTT 31910 || || |||||||||||||||||| || ||||||||| ||||| Sbjct 1199 TTCCTTGGA--CTGCATGCGCTCGTGCATGGCCAGCAGGCGCTCCATCTT 1152 >seq4239 Length=1987 Score = 86.0 bits (94), Expect = 2e-12 Identities = 201/296 (68%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 30253 GCCCTCCCCATCTATCAGGTTGCGTCCACTTCACGCCGCACTCAGCGCCATACGCCGTG- 30311 |||||||||| | || ||||||||| ||| ||| ||||| | || ||| Sbjct 1767 GCCCTCCCCAGTTGTCCTTTTGCGTCCAGCGCACCTGATGCTCGGCGCCGAAGGC-GTGC 1709 Query 30312 ATCCATTCAATGAGACTGGCACATCGCTTCTTGCTCAGTTTGCTGGTCTGCGTGTAGAGG 30371 | |||||| || || | | || |||| | | || |||||||| || ||||| | Sbjct 1708 ACCCATTCGATCAGCTCGCCGCACTGCTTTACGGTGAGCTTGCTGGTGCGCTCGTAGATG 1649 Query 30372 ACATCGATTCCCTGACCGTCGATGGCCGGGATCATGTGCGGATTCTTGCCTTCCTCCCGT 30431 || |||| || | ||||| | || |||||||| ||||| || | ||| ||| || Sbjct 1648 ACGTCGAAACCGTTGCCGTCTACCGCAGGGATCATCTGCGGCTTGTCGCCCGACTCACGC 1589 Query 30432 AGCCACGCGGCTACACAG-AGGCGCTTCCAGACCGATGCCGACCATTTCTGCCCGGCGTG 30490 ||||| ||||| ||| ||||||||||||| | | ||| |||| ||||||||| Sbjct 1588 AGCCAGGCGGCCGT-CAGCAGGCGCTTCCAGATCAGGACATCCCACTTCTTCCCGGCGTG 1530 Query 30491 GTCCACTTGCTCGGCGAGATC--CTTGAGCATGGCGTGGAGCTTCTTGTTCTGCTC 30544 || || || |||||| ||| | |||| || || || |||||||||||| Sbjct 1529 CTCGACCTGGGCGGCGATATCGGCCAGAGC--CGCATGCAGGGCCTTGTTCTGCTC 1476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136470600382788