Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq1335 556 4e-154 seq3178 140 1e-28 seq2982 86.0 2e-12 >seq1335 Length=14169 Score = 556 bits (616), Expect = 4e-154 Identities = 534/682 (78%), Gaps = 2/682 (0%) Strand=Plus/Minus Query 11514 TCACCTCCATTGTTCGCCGAAGGTGAAGCCAATCTCTGCAAGCGCCATGTCCATTTTTTC 11573 ||| | |||||| || || || || ||||| || || || ||| |||||||||||| Sbjct 9216 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 9157 Query 11574 AATGAACTCTGGCACCGCTTCCGTGAAGTCTT-CCATGTACTTTTCATCACGCTCGACAA 11632 |||||||| |||||| || || || || ||||||| |||||||| ||||| || | Sbjct 9156 GATGAACTCCGGCACCATCTC-GTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCA 9098 Query 11633 CGACATGATGAAGTCCTTCGCGCCTCATTCGCGGGTCATAATTCGAAAAGTACCAGGCGT 11692 |||||| ||| || ||||| ||| ||||||| |||||||| || | |||||||||||| | Sbjct 9097 CGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCAT 9038 Query 11693 CCTTGCCGGTTACCCACATGCTGAACTGCACCTGAGCCATGTAGGCCGACTTAATGGCTT 11752 | || | || |||||||||||| |||||||||| |||||||| |||||||| ||||| | Sbjct 9037 CTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCT 8978 Query 11753 CAAATCCGCCGAGGCGGAATTTCATGAAGTCGCGAGAAGTGAAAGGGCACTTAAGCTCAA 11812 | || || ||||| |||||||||||||| || || || || || ||||| || || |||| Sbjct 8977 CGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAA 8918 Query 11813 GCCCGCGGCCATCACTGCAAAGCCCGTCCGGTGAGCATGCAGTGCGCATGGTTTCGTCCT 11872 | ||| ||| |||||||| | || || || ||||| || |||||||| ||||||| Sbjct 8917 GGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGC 8858 Query 11873 TGTAGATAATCGGCGACTCGGTTACCTGAACGCCGGCAGTAAATTCAAACAGGGCTCTTG 11932 ||||| ||||| || || || || | ||||||| |||||| |||||||||||||| | Sbjct 8857 GATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGG 8798 Query 11933 CGTCATCCTCGTATTGTTTGCCCCATGCCAGAGCCCTGGCATTAACTTCAGGAGCTACGC 11992 |||| | |||||| ||||| ||||| ||||| ||| | ||||||||||| ||||| || | Sbjct 8797 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACAC 8738 Query 11993 CGGTACACACCTCAGCGAGAAGGGTGTGGAAGTAAGACATCTTCATGTCCGGCCATTTTT 12052 |||| || |||||||| || |||||||||||||| ||||| |||||||| ||||| || | Sbjct 8737 CGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCT 8678 Query 12053 TACCTGAGCGTGGTTTTGATATGACGTTATGAACATCTGATGCGGTGATAACTCCGAGGC 12112 | |||||||| || |||| ||| ||||| ||||| ||||| |||||||| || ||||| | Sbjct 8677 TTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 8618 Query 12113 GCAGCCTCTGCCACGCCTCATCTCCCTGTTCGACCGTGAGCACATCTATCCCTGTGCGCT 12172 | | | ||||| || ||||| ||||||||||| | ||| || ||||| || |||| Sbjct 8617 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCT 8558 Query 12173 CAAGGATGATTGCGGGAGTCAT 12194 ||||| || | || ||||| Sbjct 8557 GCAGGATAATGTCCGGTGTCAT 8536 Score = 111 bits (122), Expect = 5e-20 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 12419 AGGAATCCGAGCGCCTTAACGGCTTCGATTTGGGTAAGTTCAGAGGAATCGCGAATTTCG 12478 |||||||| || || || || |||||| || || ||||| || || ||||||| ||| Sbjct 8502 AGGAATCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCG 8443 Query 12479 CGACGGAATATTTTCGAACAAAGAGGCAGCAGGTCTTCATCCCATGTTTTATTCATGGCG 12538 || || ||||| | ||||| || |||| | ||| |||||||||||||||| || |||| Sbjct 8442 CGGCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCG 8383 Query 12539 ATGAGTACGTCGTTAATTTCTTTGATGGTGGCAATATCTGCCGGGGTGATATCGCGCTCA 12598 || || | |||||| || | ||||| || | |||| ||||| ||||| || Sbjct 8382 ATCAGCAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCC 8323 Query 12599 GGCTGCCTTTCAGC 12612 ||||| | ||| || Sbjct 8322 GGCTGACGTTCTGC 8309 >seq3178 Length=10189 Score = 140 bits (154), Expect = 1e-28 Identities = 250/361 (69%), Gaps = 3/361 (1%) Strand=Plus/Plus Query 29508 ACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGATGGCAAAAGGCCCGA 29567 ||||| | |||||||| || | ||| | | || |||||||| ||||| || ||| Sbjct 823 ACAGTCTTGGGCCAGGCCGAGCAAGTAGCGTTTCGCGCCGGCGGTTGGCAGAAAGCCATG 882 Query 29568 ATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCATCATCACGCTGGCT 29627 ||||| || |||||| ||| |||||||| | ||||| |||||||| || |||||| Sbjct 883 ATGGAGCAACAGATGCGTGATTGGTTCGGCGATGTGCCGGCATTCATCATTACCCTGGCT 942 Query 29628 GCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGGTAGAGCATGAGCTT 29687 || ||||| ||| || ||| ||| | || |||||||| || | ||||| |||||| Sbjct 943 GCCGACTACTGCGCCCAGTGCAGCGACCTTGAGTTCTGCGCCTTGATCGAGCACGAGCTT 1002 Query 29688 TATCACATCGCCCAAGAAGTGGATGAGTTTGGCTCACCGAAGTTTTACCGCGACTCAGGT 29747 |||||| | || || | || ||| || ||| | | || ||| | | | ||| Sbjct 1003 TATCACCTGGCTCACGCGACCGACAAGTACGG-TCAACCAGCATTCACC-CAAGAC-GGT 1059 Query 29748 AAGCCGAAGCTTTGCATGCGCGGACATGATGTTGAGGAATTCGTTGGCGTTGTCCGTCGA 29807 |||||| | ||| || || || || || || ||||| || || ||||| || Sbjct 1060 GCACCGAAGATCAAGCTGCAGGGCCACGACGTGGAAGAGTTCGTCGGTGTCGTCCGCCGC 1119 Query 29808 TATGGCGCAAGCGCTGATGTCCAGGAATTAGTAGATGCGGCAAATAAACCAGCAGAGGTG 29867 ||||| |||||| |||| || || | || || ||||| ||||| | || || |||||| Sbjct 1120 TATGGTGCAAGCCCTGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTG 1179 Query 29868 G 29868 | Sbjct 1180 G 1180 >seq2982 Length=1456 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 7474 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAATTAAA 7525 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152219546364924