Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq386 120 5e-22 seq3281 118 2e-21 seq385 104 4e-17 seq1979 86.0 1e-11 >seq386 Length=121086 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 |||||||| || || ||||| | || | |||||| || ||||| || || ||| Sbjct 3757 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 3698 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 ||||| || | |||||||| || | || ||| ||||||||||| ||||| Sbjct 3697 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 3638 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| | ||||| || |||||| ||||| || || ||| ||| | ||| Sbjct 3637 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 3578 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||||||||||| || || | || ||||||| ||||| || || | || ||||| Sbjct 3577 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 3519 >seq3281 Length=2714 Score = 118 bits (130), Expect = 2e-21 Identities = 212/307 (69%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCA-GA 122421 ||||||||||| | || ||| ||| ||| | ||| | ||| || ||||||| || Sbjct 1598 ATGAAACAATACTTAGATTTAATGCAGCTCGTGCTGGACCA-GGGAACACAAAAGCACGA 1656 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 | | ||||| || |||||| | | || ||| || ||| | || |||| || | Sbjct 1657 CAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGA 1716 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 ||| || || |||||||| |||||||| |||| | ||||| ||||| || || | Sbjct 1717 AGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAACTGAT 1776 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||| | | || || ||||| || || ||||||| ||||| || | ||||| Sbjct 1777 CTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGATCTG 1836 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTGA 122661 |||||| ||||| |||||| | ||| | || ||||| || || || ||||||||| Sbjct 1837 GGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGCGTTC 1896 Query 122662 GTGGCCA 122668 |||||| Sbjct 1897 ATGGCCA 1903 >seq385 Length=624889 Score = 104 bits (114), Expect = 4e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 436181 TGTAGCTCAGTTGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 436123 Query 169792 GTCAGTCCTGCCATTTT 169808 |||| || |||| ||| Sbjct 436122 GTCACTCGCGCCACTTT 436106 >seq1979 Length=9990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 198/296 (67%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCA-G 122420 |||||| |||||||| || ||||| || || |||||| | ||| || ||| | Sbjct 9039 CATGAAGCAATATCTCGAACTACTGAACGATGT-CGTGACCAATGGCCTGACCAAGGGCG 9097 Query 122421 ACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 |||| || ||||| |||||| | | | || | | || | || | | || Sbjct 9098 ACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCCG 9157 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 | || ||||||||| | || ||||| ||| ||||| || |||| | |||| | Sbjct 9158 ACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTGA 9217 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 | ||| | | | ||| | ||||||||| ||| ||||| || || ||| |||||| Sbjct 9218 TCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATCT 9277 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGG 122656 |||| |||||||| ||||| || | || |||||||||||||| |||| ||| Sbjct 9278 GGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 9333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777556433610400