Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq1445 230 4e-56 >seq1445 Length=14432 Score = 230 bits (254), Expect = 4e-56 Identities = 838/1272 (66%), Gaps = 61/1272 (5%) Strand=Plus/Minus Query 11957 TACTCGCCGGAAGTGAAAACCGCGATGGTGCTGAAGGCAAAAGACACCATCAGCAGCGGA 12016 ||||| || ||||| |||||| ||||||||||||| | ||| ||||| | ||| Sbjct 13086 TACTCACCCGAAGTCAAAACCCGCCTGGTGCTGAAGGCTTACGACGTCATCAAAAACGGC 13027 Query 12017 CGCCTGGAATACGATGCGGGCCAGACCGACATTACGCAGTCTTTTATGGCAATCCGCAAA 12076 | ||||| | |||||||||| ||| || || ||||||| || ||||| ||||||||| Sbjct 13026 AGGCTGGAGTTCGATGCGGGCTGGACGGATATGGCGCAGTCATTGATGGCTATCCGCAAA 12967 Query 12077 ACCATGACCGCCAGCGGCAACCGCTCCACCTATGAGGCGAGCCGCAGCGAGGACGCCAGC 12136 || || |||||| ||| | | ||| || ||| | |||| || || | || Sbjct 12966 ACAATCACCGCCTCCGGGCGCATGTTCACTTACACGGCCGGTCGCACAGACGAGACGGGC 12907 Query 12137 CACGCCGACGTCGCCTGGGCAATCATGCACGCCCTGCTTAACGAACCGCTGACCGCCGCC 12196 || |||||| | || ||||| | | ||||| |||| |||||||| || | | | Sbjct 12906 CATGCCGACCTAGCGTGGGCGCTGTTCCACGCGCTGCACAACGAACCCCTTGAAG--GGC 12849 Query 12197 AG-CGGCGGCGCTAACCCTTCAATTCTGGAATTTTACTGATGAGCAAACGCAGGGGCCGT 12255 || | ||||| ||| | | || |||| | |||||||||||| ||| | | || | Sbjct 12848 AGACCACGGCG--AACACCGGATTTATGGAGTCCTACTGATGAGCAGACGTAAGCGCGGA 12791 Query 12256 AAG--GCTTTCAAC-GCAAAAACGCAGCCCGT--------ACCGGCCGCCGCACCGCAGC 12304 | ||| | || || | || ||||| | || ||||| | | | Sbjct 12790 ACCCAGCTGGCCACCGCTCA---GCCACCCGTTGAAGGGGATTTGCTGCCGC-CTGAGTC 12735 Query 12305 AG--CAGGCGGAAGCGTTCACCTTTGGCGAGCCGACGCCGGTTATGGACAAGCGCGATAT 12362 | | || ||||||||||| || || || || | || || |||| | || || || Sbjct 12734 CGGGCCGGTTGAAGCGTTCACTTTCGGTGATCCCGCTCCCGTGTTGGATAGCCGGGAGAT 12675 Query 12363 CCTGGATTATGCCGAGTGCATCGGTAACGGGCGCTGGTATGAGCCGCCGGTCAGCTTTCA 12422 ||| || || |||||| | || || || |||| ||| | ||| | | | | Sbjct 12674 CCTCGACTACCTGGAGTGCTGGGCCAATGGCCGTTGGTTTGAAACACCGATGTCCATGGA 12615 Query 12423 CGGGCTGGCGAAAAGCCTGCGAGCG-GCG-GTGCATCACAGCTCGCCGATTTATGTGAAG 12480 ||| |||||||||| || || ||| || | || ||| ||| | | | | ||| Sbjct 12614 CGGCCTGGCGAAAACGACCCGGGCCAGCGTGTACCTC-CAG-TCGG-GCTGAACTTCAAG 12558 Query 12481 CGAAACATACTGGCGTCCACTTTTGTGCCGCACCCGATGATGAGCCAGCAGGAGTTC-AG 12539 || ||||| || || ||| || || || |||| | || |||| | || | || || Sbjct 12557 CGCAACATGCTTGCCCGCACGTTCGTTCCCCACCGGCTGTTGAGTCGCCAAGCCTTTGAG 12498 Query 12540 CAAGTTTGCGCTGGACTA--TCTGGTGTTCGGCAA-TGCCTTTGCC--GAGCTGCGCCGT 12594 || ||| || ||||||| |||||||| ||||| ||| | || || |||| Sbjct 12497 CA-GTTCGCCCTGGACTGGCTCTGGTGT--GGCAACTGC---TACCTGGAAAAGCGCAAC 12444 Query 12595 AACGGCCTCGGTGAG-CCGTGGCGACTGGAAACCACACCCGCGAAGTTTACCCGCCGGGG 12653 ||| ||| | | || ||| | ||| | ||| ||||||| | |||||||| Sbjct 12443 AACATGCTCCGCAACACCATGG-GCCTGCTGCCTCCACTGGCGAAGTACATGCGCCGGGG 12385 Query 12654 CGTGGAG--GAAGGCGT-TTACTGGTTTGTGAATGACTGGAAAGAGCCGCATCCGTTCGC 12710 ||||| | || | | |||| | ||| || |||||| || ||| || || Sbjct 12384 TGTGGACATGGAGACCTATTACCAG---GTGCGTGGCTGGAAGGACGAACATGAATTTGC 12328 Query 12711 CGCTGGCAGCGTCTTCCACCTCATTGAGCCGGATATTAACCAGGAGCTGTACGGCCTGCC 12770 | | || ||| |||| | ||| | ||||| |||||||| | ||||||||||| Sbjct 12327 CCCCGGTTCGATCTGCCACTTGCGCGAGGCCGATATCAACCAGGAAATCTACGGCCTGCC 12268 Query 12771 GGAATATCT--CAGCGCGTTAAACTCTGCCTGGCTGAATGA-AGCGGCCACGCTGTTTCG 12827 ||| | || |||||| ||| || ||| || || |||| |||||||||| || Sbjct 12267 GGAGTGGCTGGCAGCGCTGCAAAGC--GCACTGCTCAACGAGAGCG-CCACGCTGTTCCG 12211 Query 12828 CCGCAAGTATTATCAGAACGGCGCACACGCAGGCTACATCCTGTATATGACCGACGCGGC 12887 |||||||| || | |||||| || || || | ||| ||||| |||||||||||||| Sbjct 12210 GCGCAAGTACTACAACAACGGCAGCCATGCCGGTTTCATTCTGTACATGACCGACGCGGC 12151 Query 12888 GCAGA-GCAGCAGCGATATCGACCGGATGCGCCAGGCGATGCGCGACACGAAAGGCCTGG 12946 ||||| | | || || |||||| ||||| || || || ||||||| | | Sbjct 12150 GCAGAAGGAAGAG-GACATCGACTCACTGCGCACCGCACTGAAGAACTCGAAAGGGCCAG 12092 Query 12947 GTAACTTCCGCAATCTGTTTATGTACGCGCCGAACGGCAAGCCGGACGGAATTAAGATCC 13006 | ||||| ||||| |||||| ||||||||||| |||||| ||||| ||| || || Sbjct 12091 GCAACTTTCGCAACCTGTTTGTGTACGCGCCGGCAGGCAAGAAAGACGGCATTCAGCTCA 12032 Query 13007 TGCCGCTCAGCGAGGTGGCGACGAAAGATGATTTCTTTAACATCAAAAAGGCCAGCCGTG 13066 | ||| | |||||||| ||| | || || || ||| |||||||| |||||||| Sbjct 12031 TCCCGGTGAGCGAGGTTGCGGCCAAGGACGAATTCAGCTCGATCAAAAACATCAGCCGTG 11972 Query 13067 ACGACCTGCTGAGCGCGCACCGCGTGCCGCCGCAAATGATGGGGATTATCCCGGACGGTG 13126 |||| ||||| ||| ||| | || ||||| ||||||| || | ||| | | Sbjct 11971 ACGATCTGCTCGCGGCGTTGCGCATTCCACCGCAGTTGATGGGCATCGTGCCGCAGAACG 11912 Query 13127 CAGGCGGCTTTGG--CGATTCGGTGAAGGCGGCACAGGTGTTTGTCCG-CAATGAGCTGA 13183 | ||||| ||||| || | || | |||| || |||| || | | | ||| |||||| Sbjct 11911 CGGGCGGTTTTGGGTCGTTGCG--GGAGGCTGCTGAGGT-TTGGGCGGTCAACGAGCTGG 11855 Query 13184 CGCCGTTGCAGG 13195 ||||||||||| Sbjct 11854 AGCCGTTGCAGG 11843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94474477665288