Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq915 286 9e-73 seq2008 178 3e-40 seq2480 109 1e-19 seq3699 102 2e-17 >seq915 Length=38681 Score = 286 bits (316), Expect = 9e-73 Identities = 356/488 (73%), Gaps = 0/488 (0%) Strand=Plus/Minus Query 22207 ATAGCGGGCCCGTCTGTCGTCCAGCCCGTTCTGCCCACCGTTAATAATCTGCGTGACGCG 22266 ||| || || || | |||||| | |||||||||||||| || || |||||||||||||| Sbjct 38062 ATACCGCGCACGCCGGTCGTCGATGCCGTTCTGCCCACCATTGATGATCTGCGTGACGCG 38003 Query 22267 CAGCAAATCGCCCGGATATTTCAGGCAGCCTTTGCTGGTATAGAACCATGCTGCAGATCG 22326 || || ||||| | || |||| |||||||||| | | ||||||| || || || Sbjct 38002 CACCAGGTCGCCGGTGTACTTCATGCAGCCTTTGGTTGCGAAGAACCACGCCGCGCTGCG 37943 Query 22327 CGCTGCGGTGGCGTCTTTGGAAAGCAGTTCCGGCGAGCTCACAAGGTCAAGTTTCAGCGC 22386 || ||| |||| | | ||||| || ||| | || || || | ||||| | Sbjct 37942 GGCCGCGTATTCGTCCTGCGCCAGCAGCTCAGGCTGCTTAACCAGATCCACCTTCAGGCC 37883 Query 22387 GGCGCCGCAATCGCGGTAATTCTCGAGCCCGGTGATCTGGATGAGCCCGCGTCCGCGATA 22446 |||||| ||||| || || | ||||||||||||||||| |||||||| ||| | || Sbjct 37882 ATTGCCGCAGTCGCGATAGTTGTTCAGCCCGGTGATCTGGATAAGCCCGCGCCCGAGGTA 37823 Query 22447 TTTCCAGCCATCACCCGGGGCGTTATTACCGAGGCGCTTGCTGTAAACCAGATTGGCGAT 22506 |||||| ||| ||| |||| || || | | |||||||| ||||| |||||||| Sbjct 37822 AAACCAGCCGTCAGTCGGACCGTTGTTCCCCATTCTTTTGCTGTACACCAGGTTGGCGAT 37763 Query 22507 CGCGCGCTGGCGTTCAAGGGGCAGCACCTTTTCATACGTGCGGCGGCCCAGCGTGTTGGC 22566 ||| |||||||| || || || | | |||| | || |||||||||| ||| || Sbjct 37762 CGCACGCTGGCGCTCCAGCGGTAACGATGGTTCACCAGCACGACGGCCCAGCGCGTTAGC 37703 Query 22567 CTGATCCTGAGTTAACCGGCCAGCCCGGACAAAATCATTAAGCGCTGCGATGCTGTAGTT 22626 |||| ||||||||| || || | ||||| ||| | ||| |||| | ||||||||| Sbjct 37702 CTGACCCTGAGTTAGGCGCCCGGTACGGACGAAACCTGCCAGCCCTGCTACGCTGTAGTT 37643 Query 22627 GAAGCTCTCTTCCAGCCTGGTAAAGCCGGTGCTTTCATGGCCGACCTGCGCGATGAACAT 22686 |||| | || | ||||| |||||||||||| ||||| |||||||||||||| ||||| Sbjct 37642 GAAGTTTTCCTGCAGCCGGGTAAAGCCGGTAGACTCATGCCCGACCTGCGCGATAAACAT 37583 Query 22687 TGCCTGGT 22694 ||||||| Sbjct 37582 CGCCTGGT 37575 >seq2008 Length=9006 Score = 178 bits (196), Expect = 3e-40 Identities = 491/740 (66%), Gaps = 22/740 (3%) Strand=Plus/Minus Query 3240 ACCGTGACGTTTCGGCCGCTGACCGCCTGAAGGGTACGGGCCTGTGATTTGCCGGACGGC 3299 |||||||| | |||||||||||| || | ||| || ||| | |||||| ||| Sbjct 8992 ACCGTGACCTGGCGGCCGCTGACCAGTTGCACGGTGCGCCCCTCGCACTTGCCGTCGGGC 8933 Query 3300 AGGTTGACGATAAGCCTGTCGCCCGCTTTTGCATCCGGCGCCCGGTCGAGCGTCAGCGCG 3359 ||||||| ||| |||| ||| || | ||| || | | | ||||| || || | | Sbjct 8932 AGGTTGAGGATCAGCCGGTCACCGGGTTTGGCCTGGGTGTCGCGGTCCAGGGTGATGACT 8873 Query 3360 CGACCGTTCAC--CTGACTGATACGCCCGCCCATCACCCGCCCCGACAGATACTGATCCG 3417 ||||| || |||| ||| ||||| |||| ||| || | ||| | || | Sbjct 8872 TTGCCGTTTACGGCTGA--GATGCGCCCACCCACGGGCCGACCGGCCAGCAGTTCGTCAG 8815 Query 3418 CCACGCCGATGATATGGCCCGGCAGCGGGATCATGCCTTCCAGCCCAGTGGTGAAAC-TC 3476 | | | || | ||| ||||| ||||| || ||||| || | ||||| | Sbjct 8814 CGATCGGAACGACGTAGCCAGGCAGAGGGATACGTCCGTCCAGGCC-GACACGAAACGTT 8756 Query 3477 ACCATCCGGTCTTTAGCATTTGTCAGCAGCGCCCAGCGGCCGCGGCGGTTGGCCTCGGTA 3536 ||| |||||| || | || || |||| |||||| ||||||||| | ||||| | | Sbjct 8755 ACCGCCCGGTCCTTGGAGTTGGTGAGCAACGCCCACTTGCCGCGGCGCTGCGCCTCAG-A 8697 Query 3537 CGC-CGCGTGCAGCCGATGGCGGATATCTGCGTCTGGCGCACGCCGTAGCGCCGCACCAG 3595 | | |||||||||||||| ||| |||| | | || |||||||||||||| ||| Sbjct 8696 CTCACGCGTGCAGCCGATCGCGCTGATCTCCAGCGGGTTATCGCCGTAGCGCCGCTGCAG 8637 Query 3596 ATCAGGCTCCATCACCGCTTCCACTTCATCGGTGTAATGGTTCTCCGGGTTTGACCAGCT 3655 | | || |||| || || || | ||| | |||| |||||| |||| Sbjct 8636 CTTCTGATCGGTCACGGCCGTGACGTCGGTGTCGTAGTTGTTCAGCGGGTTGTCGTAGCT 8577 Query 3656 CACCATCGCCGTTGAATAACGGTTCTTCTC-GCTGCCGCTGGCGTAGGAGAATTTGCCGT 3714 |||| |||| ||||| || | ||| | ||| ||| | |||| ||| ||||| | Sbjct 8576 GACCAGCGCCCGGGAATAGCGTGTGCGCTCCGATGC-GCTCGAATAGGTGAACTTGCCAT 8518 Query 3715 CAATAACGTTGGCGCGGGTGTAGACATAC-----GTCA-TATCGCGCGGCATATCCGCCA 3768 | || ||||| || ||||||||| | | |||| | ||||||||||||||| || Sbjct 8517 CGATGACGTTCGCCCGGGTGTAGGCGAAGTCGAAGTCAGTGGCGCGCGGCATATCCGACA 8458 Query 3769 GCGCGGCCAGCTGATTACCGGCCCAGTATGTCATGCCGCGGAAGATGCTCGCCAGGTCGC 3828 | | | | || |||||| || |||||||| ||| | || ||| | ||||| Sbjct 8457 GGGTGAAGACTTGGCCCTGGGCCCAATAGGTCATGCCTCGGTAAATCGTCGAGATGTCGC 8398 Query 3829 GCAGCACCGTAAACGCCTCGTTCTGGCTCTGGATATACACGTCGCAGAGAAAACGTGGCT 3888 |||||| || | || || || |||||| | | || ||||||| ||||| || | Sbjct 8397 GCAGCAGCGACCATGCATCCGCCTTGCTCTGCAAGTTCAGATCGCAGATGAAACGCGGTT 8338 Query 3889 CAGTACCGCTGCCGCCGGTACCGTCCGGCACGGGCTGATCGCAGTGCTGCGCGATGCGGT 3948 | | | ||| || | |||| |||||| ||||||||||| ||||| ||||||| Sbjct 8337 C----CTG--GCCACCCTTCCCGTTCGGCACCATCTGATCGCAGTACTGCGAAATGCGGT 8284 Query 3949 AGAGTTCCCACTTGTCCACC 3968 | || ||||||||||| ||| Sbjct 8283 ACAGCTCCCACTTGTCGACC 8264 >seq2480 Length=5195 Score = 109 bits (120), Expect = 1e-19 Identities = 218/315 (69%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 36848 CCGGCAGAACTGATGCTCGCCGCGGAGCTTTTCCGCCGCGCGCGCTGCATAGCTGCAGAT 36907 |||||| ||||| |||| || || || || || || || ||| ||||||| ||| | | Sbjct 5112 CCGGCAATACTGACGCTCCCCACGTAGTTTCTCTGCGGCCCGCTCTGCATA-CTGAACAA 5054 Query 36908 -AGCCTGGCGCATCGCTTCATAGTCAGTGATTCGCTCCCCGAATGACCGGCTGCAGACGA 36966 ||||||| |||| || || | ||| |||||||| || || || || || ||||| | Sbjct 5053 CAGCCTGGTGCATGGCATCTTTGTCTGTGATTCGTTCACCAAAACTGCGACTACAGACAA 4994 Query 36967 TTTCCTGTTTTGCCGGGGCAAACTCCTCGATCTCCAGACAGGGCTCGCCGCGCAGCTCGC 37026 | | |||||||||||| | || || | | |||| ||||||| || |||| Sbjct 4993 TCTGCTGTTTTGCCGGTGGTGCTTCTTCCAGGGATATGCAGGACTCGCCGTTGAGTTCGC 4934 Query 37027 GCACGGTGCGCTCCAGCACGACGTTAAAGTGTTTGCGGAT-AAAGCGGATGTCGGTATCA 37085 | || || ||||| || | |||| | |||| ||| ||||| || || | ||| | | Sbjct 4933 GTACCGTACGCTCAAGAATGACGCTGAAGTTTTTCCGGATGAATGCCG-TGTTAGCCTGC 4875 Query 37086 CAGAGCTGCAGTGCATTTTTAATACTCATTGCCTCCAGC-TTTCTGGCAATACGCCGGCC 37144 ||||||||||| | ||||||| || || | |||| |||| | || | | || || Sbjct 4874 GCCAGCTGCAGTGCTGTGTTAATACCCAGCGCATTCAGCTTTTCCGTCAGT-CTGCGTCC 4816 Query 37145 GACGCCCCAGACTTC 37159 || |||||||| || Sbjct 4815 TACTCCCCAGACCTC 4801 Score = 89.7 bits (98), Expect = 1e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 37448 CATCACCCGCTGGCTCATGTCGCCATAGAGTTCATAGTTGCTGGAGAAGGCAATGATCCG 37507 ||| ||||| ||||||||| | || || |||| |||||||| || || || Sbjct 4506 CATGACCCGTTGGCTCATGCTGTGGTACAGCGCATAATTGCTGGAAAATACATGTATTTT 4447 Query 37508 CTGCGGAAACTGCATCTCGCGCAGCTGGAACCAGGGCATGCCCATTTTTATGCCAAGCGC 37567 || | | |||||| | || ||| ||||||||| |||||| | |||||||| || Sbjct 4446 CTTCTCCAGGCGCATCTGTCTCACCTGAAACCAGGGCTGCCCCATTCTGATGCCAAGGGC 4387 Query 37568 TTTGGCTTCGCGGCTGCGTGCTATCACACAGCCATCATTATT 37609 ||| || || ||||||| || |||||||||||||| ||||| Sbjct 4386 TTTTGCCTCCGGGCTGCGCGCGATCACACAGCCATCGTTATT 4345 >seq3699 Length=658 Score = 102 bits (112), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 21934 GCAGAGCAGCATTTTCAGCATTCGCATCAGCGAGTTCCTTCGTGTATTTGGCGTCGAGCG 21993 |||||||| |||||||||| ||||||| ||| | |||||||||||||| | || || | Sbjct 620 GCAGAGCATCATTTTCAGCTTTCGCATTAGCTAACTCCTTCGTGTATTTTTCATCCAGTG 561 Query 21994 CTGCGACATCGCGCTGGCGAGTCTGCATGTCAGTGATGGTGTCTTTAGCCAGATTTAATT 22053 | || ||||| |||||||| ||||||||||||| || | | || ||||| || | || Sbjct 560 CAGCAACATCACGCTGGCGCATCTGCATGTCAGTAATTGCCGCGTTCGCCAGCTTCAGTT 501 Query 22054 C 22054 | Sbjct 500 C 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124705286612712