Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq322 120 3e-22 seq982 118 9e-22 seq540 118 9e-22 >seq322 Length=112280 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| |||||||| || || || |||||||| |||||| ||| ||| ||| Sbjct 11004 AATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTC 11063 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| |||||| |||||||| || | || || || Sbjct 11064 TGATACCATTGAAAATGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGACCA 11123 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| |||||||| ||||| || |||||||| |||||| | ||| | | || || || Sbjct 11124 ACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAA 11183 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||||||||| || || | ||| | | ||| ||||||| || Sbjct 11184 CATCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTTTAAGAGGAGGTAT 11234 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||| || || || |||||||| || ||| ||| ||| ||| Sbjct 11689 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCT 11748 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| |||||| |||||||| || | || |||||| Sbjct 11749 GATACCATTGAAAACGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11808 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || ||||| || |||||||| |||||| | ||| | | || || ||| Sbjct 11809 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 11868 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || || || ||||| | |||||| |||| || || Sbjct 11869 ATCCAAAAAGAATCAACACTCCATTTGGTACTTAGATTAAGAGGTGGTAT 11918 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || |||||||| |||||| ||| ||| ||| Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | || |||||| |||||||| || | || |||||| Sbjct 11293 GACACCATCGAAAACGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11352 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||| ||||| || ||||||||||||||| | ||| | |||| || ||| Sbjct 11353 CAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 11412 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||| ||||| || Sbjct 11413 ATCCAAAAAGAATCAACTCTCCA 11435 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||| || || || |||||||| |||||| ||| ||| ||| Sbjct 11461 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11520 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| |||||||| || | || || ||| Sbjct 11521 GATACCATTGAGAATGTAAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 11580 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || ||||| || |||||||| ||||| | || | | || || ||| Sbjct 11581 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGACTACAAC 11640 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||||||||| || Sbjct 11641 ATCCAAAAAGAATCTACTCTCCA 11663 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || |||||||| |||||| ||| ||| || Sbjct 11917 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCT 11976 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| || || || || | || |||||| Sbjct 11977 GACACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 12036 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||| ||||| || || |||||||||||| | || | | || || ||| Sbjct 12037 CAAAGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAAC 12096 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||| ||||| || Sbjct 12097 ATCCAAAAAGAATCAACTCTCCA 12119 >seq982 Length=41121 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||| || || || |||||||| || ||| ||| ||| ||| Sbjct 2366 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTCGAAGGTTCT 2307 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || ||| |||||||| || | || || ||| Sbjct 2306 GACACCATCGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 2247 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||||||||| || ||||||||||||||| | ||| | |||| || ||| Sbjct 2246 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2187 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||| || || || ||||| | |||||| |||| || || Sbjct 2186 ATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGGTAT 2137 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || |||||||| || ||| ||| ||| ||| Sbjct 2594 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCT 2535 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| |||||||| || | || |||||| Sbjct 2534 GACACCATTGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2475 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||| || || || ||||||||||||||| | ||| | |||| || ||| Sbjct 2474 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2415 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| || || || ||||| | ||| | || || || || Sbjct 2414 ATTCAAAAGGAATCAACCCTCCATTTGGTACTTAGACTCCGTGGTGGTAT 2365 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 |||| |||||||| |||||||| || || || |||||||| || ||| ||| ||| Sbjct 2827 TAAACATGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAAG 2768 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 ||| || || | | || ||||| || || |||||||| || | || | Sbjct 2767 GTTCTGACACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCACCTG 2708 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||| |||||||| || || || |||||||| |||||| | ||| | |||| | Sbjct 2707 ATCAACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGACT 2648 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCA 28756 | ||||| ||||||||||| ||||| || Sbjct 2647 ACAACATCCAAAAAGAATCAACTCTCCA 2620 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || |||||||| || ||| || ||| |||| Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || ||| |||||||| || | || |||||| Sbjct 2078 GACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2019 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||| || || || ||||||||||||||| | || | | ||||| ||| Sbjct 2018 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 1959 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||||||||| || Sbjct 1958 ATCCAAAAAGAATCTACTCTCCA 1936 >seq540 Length=89862 Score = 118 bits (130), Expect = 9e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| |||||||| || ||||| || ||||| || || ||| ||| | Sbjct 83628 AAAATGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAGTTGAAGGT 83687 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || ||||| |||||| || ||||| || | || || Sbjct 83688 TCTGACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGAC 83747 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| ||||| |||||||| || ||||||||||||||| | || | | |||||| Sbjct 83748 CAACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTAT 83807 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| ||||| || || || ||||| | |||||| |||| || || Sbjct 83808 AACATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGGTAT 83860 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || || ||||||||||| || ||| ||| ||| Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| || ||||| || | || |||||| Sbjct 84375 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAA 84434 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||| ||||| || ||||||||||||||| | || | | ||||| ||| Sbjct 84435 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 84494 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||||||||| || || || | || | |||||| |||| || Sbjct 84495 ATCCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATTAAGAGGTGG 84541 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || |||||||| || || ||| ||| ||| Sbjct 84087 ATGCAAATCTTTGTTAAGACCTTGACCGGTAAAACTATCACATTAGAAGTTGAAGGTTCT 84146 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| || ||||| || | || || ||| Sbjct 84147 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAA 84206 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||||||||| || ||||||||||||||| || | | ||||||||| Sbjct 84207 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGCCGTACCCTCTCTGATTATAAC 84266 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||| ||||| ||||| || Sbjct 84267 ATCCAAAAGGAATCAACTCTCCA 84289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425364494756346