Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq365 93.3 4e-14 >seq365 Length=489788 Score = 93.3 bits (102), Expect = 4e-14 Identities = 215/319 (67%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 39736 GCTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACC 39795 || |||||||||||||| || || ||||| || || || | ||||| || || || Sbjct 29775 GCCCGCGCATGATCCTCGACGAACAGCCAATCGCGGACATTTGCGCCTGCGCCGTAAACG 29834 Query 39796 GG-AATCTCTTTATTCGTCAAGATACTTGTGA-TGATTTTTGGGATCAGCTTTTCTGGAT 39853 || || ||| || || || ||| || | | ||| || |||||||| ||| Sbjct 29835 GGCAAAGGCTTC--TCATCGAGCGCATTGAGAATAACAAGTGGAATGAGCTTTTCCGGAA 29892 Query 39854 GTTGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGC 39913 || | || ||| | || || |||||||| | | || || |||| | | || || Sbjct 29893 AATGGAAGGGACCATAATTGTTCGAGCAGTTCGACAGAACCACCGGCAGACCATATGTCT 29952 Query 39914 GGTGCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGCACTGTACGGGCTTGAAG 39973 |||||| || || |||||||| || |||||||| ||||| |||||| ||| | Sbjct 29953 CGTGCCACGCGCGGACCAGATGGTCCGAGGCTGCCTTTGACGCCGAGTACGGAGATGACG 30012 Query 39974 GGGCATAAGCTGTCTCTTCGGTAAAGGGAACGCCAGAGTC---TGCCATATCGCCGTACA 40030 | ||||||| || |||||||||||| | ||| ||| || || ||| ||| | | Sbjct 30013 GTGCATAAGGCGTTTCTTCGGTAAAG---ATGCCGCTGTCGAATGGCAAATCCCCGAAAA 30069 Query 40031 CTTCGTCTGTGGAGACGTG 40049 | ||||| ||||| | ||| Sbjct 30070 CCTCGTCCGTGGAAATGTG 30088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472584472140880