Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020198.1 Length=36947 Score E Sequences producing significant alignments: (Bits) Value seq3974 567 2e-157 seq3067 131 4e-26 >seq3974 Length=4040 Score = 567 bits (628), Expect = 2e-157 Identities = 1128/1642 (69%), Gaps = 49/1642 (3%) Strand=Plus/Minus Query 178 ATCCAGCGGCCTGCCCATACCACGCGACCAATGATGTCGATTGCCTCTAGGTCTTGCTTG 237 ||||| | ||| |||||||| ||||| ||||| || || | | | | | | | || Sbjct 3763 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 3704 Query 238 G--ACACGTACATCGTCTGGTAGGCCGAATTAGCGCTAATGATCGC--TAGACCGCCATT 293 | ||| | |||| |||||||| || | || ||||| |||||| | | Sbjct 3703 GGGACAACCATATCGC--GGTAGGCCTTGTTCTCACTGATGATGTGAATAGACC--CGTC 3648 Query 294 GATTTGCCGCTGGATTCGCTTGGCGTATAGGTGGTCATCCAACCGAATGACGTAGATAGC 353 || |||||||||| | || || || || |||||||||| ||| |||||||| | ||| Sbjct 3647 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 3588 Query 354 CTCGTCGCGGACCTCGCCGCAGCTGTGGTCAATCATCACCGTATCACCATCGCTCAACAG 413 ||| | | | || || |||||||||||||||||| ||||| |||||||| | || Sbjct 3587 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 3528 Query 414 CGGCTCCATTGAGTCACCGCCGATGCGAACGGCTGACATATTCGCTATCTCCAGACCTTG 473 |||||| || || ||| | | || | || |||| ||| ||||| ||||| Sbjct 3527 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 3468 Query 474 CTTCCGCAAGC-TGTA-GCGAGTGAACGCCAGCTTGGCCAAGGTCCG-CGCGCCCTCCAT 530 ||| || |||| ||| ||| |||||||| ||| ||| ||| | | || || || | Sbjct 3467 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGC-TGGGTTAGGACAGTAGCCCCTTCGCT 3411 Query 531 CCAGGAACCGTGGCCAGCACTCACCCGCGCGTCGTAGAGGGGTACGTAGGCGTAGGTGTC 590 ||||| ||||| || ||||| | |||||||| | || ||||| ||||| |||| Sbjct 3410 CCAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTC 3351 Query 591 ATCCTCTGCGGCTTCATCCGGG--GCAGCGCTGTGCA---TTTCCCCCTCCCCGGTAGCT 645 ||| | || | ||| ||||| | | || | |||||||| || | ||| Sbjct 3350 CTCCGCAATGG-----ACTGGGAAGCAGCTCCCTTCAACTTGTCCCCCTCGCCTGAAGCA 3296 Query 646 AGCCAGCCAATGTCCACCCCCGCAGCCTTTGCAATGTCCACACACCGCGCAAGCTTGGGT 705 |||||||||||||| || || | ||||| || ||||| ||||||||||| | |||||| Sbjct 3295 AGCCAGCCAATGTCGACGCCGACCGCCTTAGCGATGTCTACACACCGCGCTACCTTGGGC 3236 Query 706 TCACTGTCGCCGGTCAAGTAGTACTCCAGGGTACGCCTAGGGATAGCGGTTAGTCGCGCG 765 ||||| | ||||||| ||| ||||| ||||| || | ||||||||||| |||||||| Sbjct 3235 TCACTCTGCCCGGTCAGGTAATACTCAAGGGTGCGTCGTGGGATAGCGGTAAGTCGCGCC 3176 Query 766 AGTTCATCGCCACTTCCAACCAAGGCGGCGCAGGTTCTAATCCGAGCAGCCAGACCTTCG 825 | |||||||||||||| | | | ||||| | || || | ||||| |||||| Sbjct 3175 AACTCATCGCCACTTCCCGCTATCTCAGCGCATTGCCGGATACGTTCCGCCAGCCCTTCG 3116 Query 826 GTCATTTCGCTTTCCCCTCAGAAGAAAGCGAAA-TGCAGCCAAGAAAAATAGCTAAATTT 884 ||||||||||||| || || | ||||| ||| || | | || ||| |||||| Sbjct 3115 CTCATTTCGCTTTCTCCCTTGAGCTATCCGAAACGGCATCCCTGCACAA-AGCGAAATTT 3057 Query 885 CGCTTTGTC-AGGAAGCCTTTAGATATCAATGACTTAGCCAATTCTCGCCTCTTTATTGA 943 |||||| || | ||||| ||| | ||||| || ||| ||| || | | | Sbjct 3056 CGCTTTCTCGATAAAGCC-TTACAGATCAAAGAGATAGACAAAATCAACCACCATCAAGC 2998 Query 944 TAAATCTGGCAAGCGAAACGCCATTTTTCGCTTTACCAGTTGGCTGTTAATGGCTATGTT 1003 ||| ||| |||||||| ||||||||||||||||||| | | | | |||||||||| Sbjct 2997 CAAAGATGGAAAGCGAAAAGCCATTTTTCGCTTTACCACATAGTTATATTTGGCTATGTT 2938 Query 1004 TATGCCCTAAGTCACGTTAGACAACCCAAGTAGTCGCCCTGCATGGCGGCT-GAAATGGA 1062 ||||||||| || |||||||||| ||||| | | |||| || || | |||||| Sbjct 2937 TATGCCCTAGGTAACGTTAGACATCCCAAAAAACCACCCTTGCCGGTGGTTATGAATGGA 2878 Query 1063 ACGTAGGCATGAACAGAACCGAAATCCCCCGCGACAACAACGTCCGCTGGGAGTGGATCA 1122 |||||||||||| |||||||||||| | ||| | | | || ||||| ||||||| Sbjct 2877 CGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGGAATGGATCA 2818 Query 1123 AATACCAGCTCCGTGCCAGGGGGTCGTCCCTGGCTGAGGTGGCCCGCTCCCTCGACGTCT 1182 ||||||| || ||| || | || |||| || || |||| || || ||||| | Sbjct 2817 AATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAACTTGACGT-T 2759 Query 1183 CCAG-CCCGGCAGTCAAAAACGCCAAGCTGACTCCCTACCCTCGGGTAGAGCGCGCCATA 1241 ||| | || ||||| ||||| |||| || | || || || | ||||| || || Sbjct 2758 ACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAGCGAGCTATT 2699 Query 1242 GCTGCTGTACTCGACCTCAGCCCGCTAGTGCTGTGGCCAGAGCGCTGGCTAGACGACGAG 1301 || || || | ||||| || | | ||||||| || || ||| | ||| Sbjct 2698 GCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAACGCAAACGGC 2639 Query 1302 AATCCGAAGCGGCAACGGCCGAATCGCTCGGAGACCTTGCAGGCATATGTCAGACATATG 1361 | || | || ||| | | ||| | || || | ||| | || || | Sbjct 2638 ACCCCACACCGTATTCGGGTGCAGCGCGCAGA-AC--ACAACGCA-ACTTC-----TA-G 2589 Query 1362 CCAGGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGCGTAAAGCCGGCGCGGGG 1421 ||| | || | | |||| | || || || |||||| ||||| ||| | Sbjct 2588 CCAAGAGC------ATAACCCAGCT--TATGCCCTTCGACACCGTAAAACCGGCACGGAG 2537 Query 1422 GCTTGAACATGGCCCGCCGCAAAGACGATCGAACGCTGGACATCTTCGATGTTCCGCAGC 1481 | | |||||| ||| || || ||||| ||| | ||||||||| ||| || |||| Sbjct 2536 GTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGC 2477 Query 1482 CGGCCCTCGCTATACCTGGTGAGTGCAACTACGCCGCTCAAGTCAGCGAACTGGTCAGCG 1541 | | || ||||| || || | ||||| | ||||| || ||||| |||||| |||||| Sbjct 2476 CAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCG 2417 Query 1542 AAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCGCCCGGATGTCGCGCCTGT 1601 | |||||||| | || ||| || ||||||||||| | | || || ||||| ||| ||| Sbjct 2416 AGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGT 2357 Query 1602 CCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCGCCCGAACTGATC 1661 | |||||||||||||| ||| ||||||| ||||| |||||||| || |||||||| || | Sbjct 2356 CTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACC 2297 Query 1662 ACAACTTGCCTTTCTACCGCGCCGCCCTTCTGGAGGACGTCTGCGCGAGCCATCTGCTGA 1721 | ||| |||| ||||| | ||| | || || || || || || || || | | | Sbjct 2296 ATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAA 2237 Query 1722 CCAACTGGCTGGTCGATGTACGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTGCTCG 1781 || |||||||||| || |||||| ||||||||||||||||| ||||||||||| || Sbjct 2236 CCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACG 2177 Query 1782 CCGAACTGGGCCGCCTTGAGCG 1803 | || || || || || | ||| Sbjct 2176 CGGAGCTTGGTCGTCTGGCGCG 2155 >seq3067 Length=6736 Score = 131 bits (144), Expect = 4e-26 Identities = 122/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 9390 CATTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 9449 |||| ||||||| ||||||||| | | ||| |||||||||||||||||| ||||||||| Sbjct 2330 CATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 2272 Query 9450 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGCCGCCTGGCG 9507 ||||||||||||||||||||| ||||| ||| | |||| ||| | ||||||||| Sbjct 2271 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 2214 Query 9508 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 9539 | || || |||| || ||||| ||||||| Sbjct 2213 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 2182 Score = 127 bits (140), Expect = 5e-25 Identities = 221/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Minus Query 9786 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTG 9845 || ||||||||||||||| | || || |||| || || ||||| || || ||| || Sbjct 1953 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1894 Query 9846 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9905 | ||||| ||||| ||||| |||||||| ||||| ||| |||||||||| | ||| Sbjct 1893 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1834 Query 9906 CTGGTCGAACTCCAGCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGG 9959 |||| ||| | ||| |||||||| ||||||| | || ||| ||||| Sbjct 1833 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 1777 Query 9960 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 10019 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 1776 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 1717 Query 10020 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTC 10079 ||| ||| | ||| ||||| || |||||| ||||||| |||||||||| ||||| Sbjct 1716 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 1657 Query 10080 GAGCGGGTCGAGTGGCTGGAC 10100 ||||| || || ||||| ||| Sbjct 1656 GAGCGAGTGGAATGGCTAGAC 1636 Score = 86.0 bits (94), Expect = 1e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 6920 GCCTGGGGCGAGCGTCCGCCTGTCTTCGTCCAGCTGCTGGCCGCCGAGGTGGCCCGCAGC 6979 || |||||| || |||| | ||||| | ||||| |||||||| || || || | Sbjct 5466 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 5407 Query 6980 AGCCAGACGAAAGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 7039 | | |||| || ||| || || |||||||||||||| || |||||||| | ||| Sbjct 5406 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 5347 Query 7040 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGTCGTGTCCTGGCCGCGCTG 7099 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 5346 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 5287 Query 7100 AGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTG 7149 | || ||||| || ||| ||| |||| | || ||| ||| | |||| Sbjct 5286 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTG 5237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118097896638492