Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020200.1 Length=36429 Score E Sequences producing significant alignments: (Bits) Value seq3974 286 8e-73 seq3067 122 2e-23 >seq3974 Length=4040 Score = 286 bits (316), Expect = 8e-73 Identities = 558/814 (69%), Gaps = 28/814 (3%) Strand=Plus/Minus Query 978 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCaaaaaaaCCACCCTGCACGGTGGTT 1037 ||||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||| Sbjct 2945 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAA-CCACCCTTGCCGGTGGTT 2887 Query 1038 GAGATGGAACG-TAGGCATGAACAGAACCGAAATACCCCGCGACAACAACGTCCGCTGGG 1096 || | ||| |||||||||||| ||||||||| || | ||| | | | || |||| Sbjct 2886 ATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGG 2827 Query 1097 AGTGGATCAAATACCAGCTCCGCGCCAGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTCCC 1156 | |||||||||||||| || || || | ||| |||| || || |||| || | Sbjct 2826 AATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAAC 2767 Query 1157 TCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCTCGGGTAGAG 1215 | ||||| | ||| | || ||||| ||||| |||| | | || || || | ||| Sbjct 2766 TTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAG 2708 Query 1216 CGCGCCATCGCCGCTGTGCTCGACCTCAGCCCCCTGGTGCTGTGGCCTGAGCGCTGGCTC 1275 || || || ||| || ||| | ||||| || | | ||||||| || || ||| | Sbjct 2707 CGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAAC 2648 Query 1276 GACGACGAGAATCCGAAGCGGCAACGGCCCAATCGTTCGGAAACCCTCAAGGCATATGAC 1335 | ||| | || | || ||| | || | ||| | ||| ||| | Sbjct 2647 GCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA---CACAACGCAACT--- 2594 Query 1336 AGTGTCATATGCCGATCCGGGAAAAATAACAGATACGCTGA--CCAAGCG-CAGCGTAAA 1392 || || ||| | | ||||| | ||| | || || || |||||| Sbjct 2593 ----TC-TA-GCCAAG------AGCATAACCCA---GCTTATGCCCTTCGACACCGTAAA 2549 Query 1393 GCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACATCTTCG 1452 ||| | ||| || | |||||| ||| || || || || || | ||||||||| Sbjct 2548 ACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCT 2489 Query 1453 ATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACGCCGCCCAGGTCAGCG 1512 ||| || ||||||| || ||||| || || | ||||| | ||||| |||||||| | Sbjct 2488 CTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTG 2429 Query 1513 AGCTGGTCAGCGAAATACTGAAGGCCGCCAACCTCGACCGTTACGAGATTGCCGCCCGCA 1572 | ||| ||||||| || ||||| | || | || ||||||||||| |||| || |||| Sbjct 2428 AACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCA 2369 Query 1573 TGTCGCGCCTCTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCG 1632 |||| ||| | || |||||||||||||| ||| ||||||| ||||| |||||||| || | Sbjct 2368 TGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAG 2309 Query 1633 CCCGAGTTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAAGACGTCTGCGCGA 1692 ||||| || || ||| |||| ||||| | ||| | || || ||||| || || | Sbjct 2308 CCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCA 2249 Query 1693 GCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGTGGCCGCGTGGCCTATGGCCGAG 1752 | ||| | | ||| |||||||||| || || |||||||||||||| || || || | Sbjct 2248 GTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCG 2189 Query 1753 ACGCACTGCTCGCCGAACTGGGCCGCCTGGAGCG 1786 | ||||| ||| || || || || |||| ||| Sbjct 2188 ATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 2155 Score = 134 bits (148), Expect = 3e-27 Identities = 214/302 (71%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 294 GATCTGCCGCTGGACGCGCTTGGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGC 353 || ||||||||||| | || || || | ||||||||||| ||||||||||| ||||| Sbjct 3647 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 3588 Query 354 TTCGTCACGAACCTCATTGCAACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAG 413 || | || | ||| ||||||||||||||||| |||||||||||||| | || Sbjct 3587 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 3528 Query 414 TGGCTCCATTGAGTCACCGCCGATGCGGACGGCCGACATATTCGCGATCTCCAGGCCTTG 473 | |||||| || || ||| | | |||| || |||| ||| ||||||||||| Sbjct 3527 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 3468 Query 474 CTTCCGCAAGC-TGTA-GCGAGTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTC 531 ||| || |||| ||| ||| ||||| || | ||| | || | ||||| || || Sbjct 3467 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTC 3410 Query 532 CAGGAGCCGTGACCAGCGCTCACCCGAGCGTCATACAGAGGGATATAGGCGTAATTGTCG 591 |||| |||||| || || || | ||||| |||| ||| | || ||||| ||||| Sbjct 3409 CAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 3350 Query 592 TC 593 || Sbjct 3349 TC 3348 >seq3067 Length=6736 Score = 122 bits (134), Expect = 2e-23 Identities = 132/173 (76%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 8279 ACGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTC 8336 ||||||| |||| | || | || | ||||||| ||||||||| | | ||| ||||| Sbjct 2353 ACGGCCAGGAACAACTTGCCCTGCATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTC 2295 Query 8337 TGCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAAACTAAGACG 8396 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 2294 TGCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAA 2235 Query 8397 GACCGCCAGCGCCGCCTGGCGCGAGAACGCCAACGGGCGAAGCGCGAGCGCGA 8449 | ||| | ||||||||| | || || |||| || ||||| ||||||| Sbjct 2234 CAGCGCAAAACCCGCCTGGCATGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 2182 Score = 118 bits (130), Expect = 2e-22 Identities = 219/321 (68%), Gaps = 9/321 (3%) Strand=Plus/Minus Query 8696 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 8755 || |||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 1953 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1894 Query 8756 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 8815 | ||||| ||||| ||||| |||||||| ||| | ||| |||||| ||| || Sbjct 1893 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1834 Query 8816 CTGGTCGAACTCCAGCGCTTGGGCTGG------AAACCGAAGAGCAATCGGCAAGGCCGG 8869 |||| ||| | |||||||||||| ||||||| | || ||||||||| Sbjct 1833 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 1777 Query 8870 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 8929 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 1776 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 1717 Query 8930 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTC 8989 ||| ||| | ||| ||||| || |||||| ||||||| |||||||||| ||||| Sbjct 1716 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 1657 Query 8990 GAGCGGGTCGAGTGGCTGGAC 9010 ||||| || || ||||| ||| Sbjct 1656 GAGCGAGTGGAATGGCTAGAC 1636 Score = 86.0 bits (94), Expect = 1e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 5670 CGCCTGTCTTCGTCCAGTTGCTGGCCGCCGAGGTGGCCCGCAGCAGCCAGACGAAGGCCG 5729 |||| | ||||| | |||| |||||||| || || || || | |||| |||||| Sbjct 5450 CGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACCAACAAGACCAAGGCCA 5391 Query 5730 GCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTCGCCAACCGCTACCCGT 5789 || || |||||||||||||| || |||||||| | ||| |||||||||| ||| Sbjct 5390 GCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTTTCCAACCGCTATGCGT 5331 Query 5790 CGCCCTCGACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTGAGCCGTATTGAGTGCC 5849 ||||| | | | || ||||| || || ||| | ||| | || ||||| || Sbjct 5330 CGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTGGGGCGCATTGAATGTG 5271 Query 5850 CGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTGC 5884 ||| ||| |||| | || ||| ||| | ||||| Sbjct 5270 TCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 5236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116440449661908