Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020203.1 Length=37095 Score E Sequences producing significant alignments: (Bits) Value seq3974 336 5e-88 seq3067 129 1e-25 >seq3974 Length=4040 Score = 336 bits (372), Expect = 5e-88 Identities = 1092/1669 (65%), Gaps = 85/1669 (5%) Strand=Plus/Minus Query 189 ATCCAATAGCTGGCCCAAACCACGCGCCCGACAATATCCAGGTCTTGCAACTGCTCTTTG 248 |||||| || ||||| || ||||| || | || |||||||| | ||||| || || Sbjct 3763 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 3704 Query 249 GGCACAGTCATTTCTGTGTACGCCCGATTCTCGCTTATGATCGCAATCGATCCGTCAAAC 308 || ||| ||| || ||| ||| ||||| || ||||| ||| || ||||| ||| Sbjct 3703 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 3644 Query 309 CTACGCTGTAGGCGCTTGGCATACAGGTGATCCTGGAGCCGGATGACGTAAACAGCCTCG 368 ||||| || | || ||||| || || || | |||||||||||||| |||||||| Sbjct 3643 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 3585 Query 369 TCCCGTACCTCTCGATACGA--GTGGTCAACCAGGACGGTATCCCCATCGGACAACAACG 426 |||| | | | | || |||||||| || || ||||| |||||| | | Sbjct 3584 TCCCTCAAG-CGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTC 3526 Query 427 GCTCCATTGAGTCGCCGCCAACGCGGACAGCTGAGAGGTTAGCGGTGTCGAGCCCCTTCT 486 |||||| || || ||| | || |||| || || || || | ||| || || | || Sbjct 3525 CCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCT 3466 Query 487 TTCTCAGGCTGTACCTGGTAAACGCCAGCTTCGTCAGTTCTCGGGCTCCCTCTGTCCAGG 546 | | || |||| ||| ||||| |||| || || | || || || |||||| Sbjct 3465 TGCGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGG 3406 Query 547 AGCCATGTCCCGCGCTTACTTTCGTGTCATACAACGGGATGTAGGCATAGTCGGGGGCTC 606 ||| |||||||| || | | ||| ||||| || | ||| || || | | ||| Sbjct 3405 CGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTC--CTC 3348 Query 607 C-CGCTGGGCT----AGCGGCCTCTGGCGACTCGCCCCCCGTACTCCCCGATGCACTCTG 661 | | ||| || ||| || | | ||| | ||||| || || || | Sbjct 3347 CGCAATGGACTGGGAAGCAGCTCCCTTCAACTTGTCCCCC----TCGCC--TGAA----- 3299 Query 662 TTTGCCGGCGATCAACCAATCCAAGGATACGCCTGCCGCCTCCGCTATAGCCGCACAGCG 721 || || || ||||| | ||||| |||||| || || | |||| || Sbjct 3298 ---GCAAGC---CAGCCAAT----GTCGACGCCGACCGCCTTAGCGATGTCTACACACCG 3249 Query 722 GGATGCCTTTGGCTCGCTATCACCTGTGAGGTAAGCCTCCAAGGTGCTTCGGGGGATAGC 781 | | |||| ||||| || | || || |||||| ||| | ||||| ||| |||||||| Sbjct 3248 CGCTACCTTGGGCTCACTCTGCCCGGTCAGGTAATACTCAAGGGTGCGTCGTGGGATAGC 3189 Query 782 CGTTTTCCGGGCGAGGCTATCACCGTTTCCGACTATGTTTGCGCACTCACGAATGCGGGC 841 || || || | ||| || |||| |||| | ||||| | || || || | Sbjct 3188 GGTAAGTCGCGCCAACTCATCGCCACTTCCCGCTATCTCAGCGCATTGCCGGATACGTTC 3129 Query 842 CGCAAGGCTGTCTGTCATTTCGCTTTCTCACCTGAGGAATACGAAAC-------CTGGAC 894 ||| || | || ||||||||||||||| | |||| || |||||| ||| || Sbjct 3128 CGCCAGCCCTTCGCTCATTTCGCTTTCTCCCTTGAGCTATCCGAAACGGCATCCCTGCAC 3069 Query 895 GAAACTAGGTTTCTGATTTCGTATTCCGaaaaaaaCCATACAAATCAACGATATGGTCAA 954 || | | |||| | |||| ||| ||| || |||| ||||| || || | ||| Sbjct 3068 AAAGCGAAATTTC-GCTTTCT-----CGATAAAG-CCTTACAGATCAAAGAGATAGACAA 3016 Query 955 TTTCAGAACCTCGA--ATGCCGAAATTCAGCAAACGAAATTCCGTTTT-CGGTTGAT--- 1008 ||| ||| | | | ||| || | | || ||||| || |||| || || | Sbjct 3015 AATCA--ACCACCATCAAGCCAAAGATG-GAAAGCGAAAAGCCATTTTTCGCTTTACCAC 2959 Query 1009 -TGGTCTTCCGAAAACGACTATGTTTATGCCCTAAGTCACGTTAGACAACCCAAGTAGTC 1067 | || | | | |||||||||||||||| || |||||||||| ||||| | | Sbjct 2958 ATAGTTAT----ATTTGGCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAACC 2903 Query 1068 GCCCTGCATGGCGGCTGA-AATGGAACGTAGGCATGAACAGAACCGAAATCCCACGCGAC 1126 |||| || || | |||||| |||||||||||| |||||||||||| | ||| Sbjct 2902 ACCCTTGCCGGTGGTTATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGAC 2843 Query 1127 AACAACGTCCGCTGGGAGTGGATCAAATACCAACTCCGCGCCAGGGGATCGTCCCTGGCC 1186 | | | || ||||| ||||||||||||||||| || || | || |||| || || Sbjct 2842 CCAACCCTGCGATGGGAATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCA 2783 Query 1187 GAGGTGGCCCGCTCCCTCGACGTCTCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAACCC 1245 |||| || || ||||| | ||| | || ||||| ||||| |||| | | | Sbjct 2782 ATCTTGGCGCGTGAACTTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGC 2724 Query 1246 CTACCCTCGGGTAGAGCGCGCCATCGCTGCCGTGCTCGA--CCTCAGCCCCCTGGTGCTG 1303 || || || | ||||| || || || |||||| | | ||||| || | | || Sbjct 2723 ATATCCGCGAATGGAGCGAGCTATTGC--CCGTGCGCTAGGCCTCAAGCCAATCGACTTG 2666 Query 1304 TGGCCTGAGCGCTGGCTCGACGACGAGAATCCGAAGCGGCAACGGCCGAATCGTTCGGAA 1363 ||||| || || ||| || ||| | || | || ||| | | || | ||| Sbjct 2665 TGGCCCGAACGTTGGAACGCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA 2606 Query 1364 ACCCTCAAGGCATATGACAGTGTCATATGCCGATCCGGGAAAAATACCAGATACGCTGAC 1423 | ||| ||| | || || ||| | | | | || |||| | || | Sbjct 2605 ---CACAACGCAACT-------TC-TA-GCCAA---GAGCATAAC-CCAGCTTA--TGCC 2564 Query 1424 CAAGCGCAGCGTAAAGCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCA 1483 | || |||||| ||| | ||| || | |||||| ||| || || || || | Sbjct 2563 CTTCGACACCGTAAAACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTA 2504 Query 1484 CCCTGGACATCTTCGATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACG 1543 | | ||||||||| ||| || ||||||| || ||||| || || | ||||| | | Sbjct 2503 CGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATG 2444 Query 1544 CCGCCCAGGTCAGCGAGCTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACG 1603 |||| |||||||| || ||| ||||||| |||||||| | || ||| || |||||||||| Sbjct 2443 CCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACG 2384 Query 1604 AGGTCGCCGCCCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAGAACATGCTCGACG 1663 | | | || |||||||| ||| | ||||||||||||||||| ||| ||||||| |||| Sbjct 2383 AAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACG 2324 Query 1664 CCTGGTCGAGTCCCGCCCGAGCTGATCACAACCTGCCTTTCTACCGCGCCGCCCTCCTGG 1723 | |||||||| || |||||| | || || |||||||| ||||| | ||| | || || | Sbjct 2323 CGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTG 2264 Query 1724 AGGACGTCTGCGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGCGGCCGCG 1783 | || || || || ||| | | ||| |||||||||| || || || ||||||| Sbjct 2263 AAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCG 2204 Query 1784 TGGCCTATGGCCGAGACGCACTGCTCGCCGAGCTGGGCCGCTTGGAGCG 1832 |||| || || || || ||||| ||| ||||| || || ||| ||| Sbjct 2203 TGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 2155 >seq3067 Length=6736 Score = 129 bits (142), Expect = 1e-25 Identities = 178/247 (72%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 8553 ATGGAACCCAACAAAGCCCTGGAAAAAATCAAGAAACTGCTTCGCCTAGCAGGCAGCAGC 8612 ||||| | | ||||||||| || ||||||||||| ||||| ||||| |||| ||| Sbjct 2974 ATGGACCAGAGCAAAGCCCTAGACAAAATCAAGAAGCTGCTGCGCCTGGCAGCTAGCGAT 2915 Query 8613 AACCCACACGAAGCGGCGGCCGCCATGCGCCAGGCGCGGGCGATGATGGAGAAACACGGC 8672 ||||| |||||||| || || ||||||| |||||| || || ||||||| || || || Sbjct 2914 AACCCGCACGAAGCTGCCGCAGCCATGCACCAGGCCCGCGCCTTGATGGAAAAGTACCGC 2855 Query 8673 ATTGGCGAGAGCGATATT--GCTCTGGCTGACGTCACCGAACACGGCACCGGTAGCGGCT 8730 ||| ||| |||||| ||||| | || || |||| || | || ||||||| | Sbjct 2854 CTTGAAGAGTCGGATATTCAGCTCT--CCGAGGTATTCGAATGCGCCGCCCGTAGCGGTT 2797 Query 8731 CCAAACTGAAGCCCGCGCAGTGGGAAGCTAATCTCGGCGGCACCGTCGCGAAGGCATACT 8790 | || ||| || |||| |||||||| || || | || | ||| | |||| ||| Sbjct 2796 CAAAGATGACCCCGCCGCAATGGGAAGCCAACCTGGTGGGTGCAGTCACCCAGGCCTACG 2737 Query 8791 CCTGCAA 8797 ||||||| Sbjct 2736 CCTGCAA 2730 Score = 123 bits (136), Expect = 6e-24 Identities = 220/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Minus Query 9556 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9615 || ||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 1953 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1894 Query 9616 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9675 | ||||| ||||| ||||| |||||||| ||||| ||| |||||||||| | ||| Sbjct 1893 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1834 Query 9676 CTTGTCGAACTCCAGCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGG 9729 || | ||| | ||| |||||||| ||||||| | || ||| ||||| Sbjct 1833 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 1777 Query 9730 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 9789 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 1776 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 1717 Query 9790 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGTC 9849 ||| ||| | ||| ||||| || |||||| |||||||| |||||||||| ||||| Sbjct 1716 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 1657 Query 9850 GAGCGGGTCGAGTGGCTGGAC 9870 ||||| || || ||||| ||| Sbjct 1656 GAGCGAGTGGAATGGCTAGAC 1636 Score = 120 bits (132), Expect = 7e-23 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8878 TGCTGCGCCAGGTGCGCAAGGCCCGCCGCGACTACATCGCCACCGAGCTTAAGCGCTGCA 8937 |||| ||||| || ||| || ||||||| |||| ||| | || || | |||||||||| Sbjct 2671 TGCTACGCCAAGTCCGCCAGTCCCGCCGTGACTTCATTGGAACGCAGTTGAAGCGCTGCA 2612 Query 8938 AGGCCTCCACCAAAACCAAGCGTGGCGACCTGTTCTGCGACGCCTGGGTGTGGTCGGTGC 8997 || | | ||||| |||||||||| |||| ||||||| | ||||||||||| | |||| Sbjct 2611 AGCCTGCTACCAAGACCAAGCGTGCCGACGTGTTCTGTGGCGCCTGGGTGTCAGCAGTGC 2552 Query 8998 GTAAGCAGGTCAATCAGTTCGCCGGGAGTGCGCAGCCGTCGCTGGCAGCCGAGGCGTACA 9057 | ||||||| ||| || || | | |||| || | |||| | | |||||||| Sbjct 2551 GCCGACAGGTCATGGCGTTTGCTGGCAACGATGAGCCTTCACCGGCAACAGCGGCGTACA 2492 Query 9058 TGGTGAAGCACCACCCCGA 9076 || | |||||||| |||| Sbjct 2491 TGCTTAAGCACCATTCCGA 2473 Score = 84.2 bits (92), Expect = 5e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 8472 CACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8531 |||| ||||||||||||| || | ||||| |||||||| | |||||| | | ||||| Sbjct 3310 CACTAAGCGAAACCGCCCTGGTCAT-CCGGGGTGGTCTGCCAGGCGTGGTTGCCTGGTAC 3252 Query 8532 TGACGAGCAGCCGAGGAATACATGGA 8557 |||||||||||||||||| | ||||| Sbjct 3251 TGACGAGCAGCCGAGGAACAAATGGA 3226 Score = 84.2 bits (92), Expect = 5e-12 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 5922 GCCTGGGGCGAGCGTCCGCCCGTCTTCGTCCAGTTGCTGGCCGCCGAGGTGGCCCGCAGC 5981 || |||||| || |||| | ||||| | |||| |||||||| || || || | Sbjct 5466 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 5407 Query 5982 AGCCAGACGAAGGCCGGCGAAGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6041 | | |||| |||||| || | |||||||||||||| || |||||||| | ||| Sbjct 5406 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 5347 Query 6042 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTG 6101 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 5346 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 5287 Query 6102 AGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTGC 6152 | || ||||| || ||| ||| |||| | || ||| ||| | ||||| Sbjct 5286 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 5236 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 8477 AGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGACG 8536 ||||||| ||||||||| | | ||| |||||||||||||||||| |||||||||||| | Sbjct 2325 AGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 2267 Query 8537 AGCAGCC 8543 ||||||| Sbjct 2266 AGCAGCC 2260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118571452917516