Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020841.1 Length=40803 Score E Sequences producing significant alignments: (Bits) Value seq3418 102 2e-17 >seq3418 Length=564 Score = 102 bits (112), Expect = 2e-17 Identities = 181/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 13049 TGTCCAGTTATCGCACTGTCACAGCTTAACCG-TAGCTTAGAGAGCCGACCAAACAAACG 13107 ||||| || || || ||||||||||||||||| | || | |||| ||| || || ||||| Sbjct 280 TGTCCGGTAATTGCCCTGTCACAGCTTAACCGATCGC-TGGAGAACCGTCCGAATAAACG 338 Query 13108 GCCCATCATGAGCGACCTAAAAGAGTCAGGGGCCATTGAGGAAAACGCTGACGTGATTAT 13167 || | ||| |||| | || || || || || ||| | | || ||| |||| || Sbjct 339 TCCGGTGATGTCCGACTTGCGTGAATCCGGTGCGATCGAGCAGGATGCCGACTTGATCAT 398 Query 13168 GTTCCTGTACCGCGATGAGGTTTATAACGAAAACTCGGACCAAAAAGGTATTGCTG-AGG 13226 ||| | ||||| ||||||||||||||| | | || | || || | ||| | | Sbjct 399 GTTTATTTACCGGGATGAGGTTTATAACAAGGAATCTAAAGAAGCTGGCACTGCCGAAAT 458 Query 13227 TAGGAGTGGCTAAAAACCGTCAAGGGCCAGTTGGGACCGTAAGACTAGCGTTTGAGGGTG 13286 || | ||| ||| | ||| | || ||| |||| |||||| | || || || || ||| Sbjct 459 TATTATCGGC-AAACAGCGTAATGGTCCAATTGGTACCGTACGTCTGGCATTCGAAGGTC 517 Query 13287 AATACAGCCGCTTTAGCAA 13305 |||| | ||||||||| || Sbjct 518 AATATACCCGCTTTAGTAA 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130435957529820