Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq332 242 2e-59 seq54 158 6e-34 seq1819 118 5e-22 >seq332 Length=17232 Score = 242 bits (268), Expect = 2e-59 Identities = 335/469 (71%), Gaps = 0/469 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| ||||| || || |||||| ||||| ||||| |||||||| | ||| | Sbjct 5008 ATTGGGACAAAACAATGACCAATCGGCATTGGTTTCAACACGTTCCATAAAGAGATCGGA 4949 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 || ||| | ||||| || | ||| | || | |||||||| ||||||||||||||||| Sbjct 4948 AACCCAGAGGGCATAGAAAAGATCACGAGCACGAATTTCTTCCTTTCCGTGATTCTTTTT 4889 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | ||| || || ||||||||||||| ||||||||||| ||||| | |||||| ||| Sbjct 4888 CAAATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCCAAATAAACGGCAAAAGCACC 4829 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 |||||| || ||||||||||||||||| || | || || ||||| || || | ||| Sbjct 4828 TTTTCTCTTGCCTCCACCTTGATCTACATAACGAGCGGTATCATTAAAGACACGAAGCAT 4769 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||||| |||||| | ||| ||| || || | | |||| | | | | | ||| Sbjct 4768 TGGAACCAATCCATTGGAAGTTCCATTGGTACCACGAATATAACTACGAGCAGCACGAAT 4709 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAAC 26247 | |||| || |||||| || |||||||| | |||||||| ||| | | | Sbjct 4708 CTTGTGAACAGCAATACCAATACCACCAGCAGACTTTGAAATTAAGGCAGTTTGTTTTAG 4649 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 |||||| ||||||| | || |||||| | |||||| || || ||||||||||| | Sbjct 4648 GGTATCGTAAATTCCCTCGATACTATCATCCTTCATTTGTACCAAGAAACAAGAAGACAT 4589 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTA 26356 ||| | || || || || | ||| || | ||| || |||||||||||| Sbjct 4588 TTGAGGATAAGGAGTACCAGCATTGAAAAGTGTAGGAGTAGCATGAGTA 4540 >seq54 Length=99412 Score = 158 bits (174), Expect = 6e-34 Identities = 285/412 (69%), Gaps = 6/412 (1%) Strand=Plus/Minus Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||| | ||||| || | || | || | || |||||||| |||||||| ||| Sbjct 90025 AATCCAGAGGGCATAGAACAGGTCGCGTGCACGCAACTCTTCTTTGCCGTGATTTTTTCG 89966 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 ||| ||||| || ||||||||||| | |||||| ||||| ||||| || |||||||| || Sbjct 89965 TAGGTCTAAAAACTCAAAAATATCAGCGTGCCAAGGTTCCAAATAAATGGCAAAACTTCC 89906 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTC--AAC 26125 ||||||| ||||||| ||||| |||||||| | || | |||| ||| || | | | Sbjct 89905 TTTTCTTCTTCCTCCCCCTTGGTCTACGTAGCGAGCGG--TCATATCAAAGTTGCGTAGC 89848 Query 26126 ATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTA 26185 || || || | ||| | |||| || || || | | ||| | || ||||| | | Sbjct 89847 ATGGGTACAATGCCATTGGAAACCCCATTGGTTCCTTTAATGTAAGAGCCTGTTGCACGG 89788 Query 26186 ATATCGTGAGCA-TGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGA 26244 ||||| ||| | | ||| || | ||||| ||| ||| |||||| ||||| | | Sbjct 89787 ATATCATGAATACTTAAT-CCCACGCCACCTGCCGATTGTGAAATTTTAGCACACTGTTT 89729 Query 26245 AACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGA 26304 | ||||| | || || | |||||||| | ||||| | | ||||| || || Sbjct 89728 TAAAGTATCATAGATGCCATCAATGCTATCTTCCTTCATGGTGAGCAGGAAACAGGAGGA 89669 Query 26305 TAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTA 26356 || || | | || ||||||| |||||| | || || |||||||| ||| Sbjct 89668 TAGCTGTGGTTTAGGCGTTCCTGCATTAAAAAGGGTAGGGGTAGCATGTGTA 89617 >seq1819 Length=3716 Score = 118 bits (130), Expect = 5e-22 Identities = 324/487 (67%), Gaps = 12/487 (2%) Strand=Plus/Plus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACT-TTCTCCATAAATAAATCTGGAAT 25950 |||||||||||| ||| || | |||| || || ||||| || || | || | Sbjct 2215 GGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTC-ATGAACAGGTCACATAC 2273 Query 25951 CCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAG 26010 ||| | ||||| ||||||||||| || | | ||||||||| || || || || || Sbjct 2274 CCAAAGGGCATAGAATAAATCTCTGGCACGAAGTTCTTCTTTACCATGGTTTTTACGCAG 2333 Query 26011 ATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTT 26070 || | ||| | | ||||| |||||||| || | || || |||||| |||||| Sbjct 2334 GTCCAGAAAACTCAGCACATCTGCATGCCATGGCTCCAGGTAAATGGCAAAAGCACCTTT 2393 Query 26071 TCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGG 26130 | ||| |||||||| || || || || | || || || || || ||||||||||| || Sbjct 2394 ACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTATCGTTAAATACTTTCAACATAGG 2453 Query 26131 AACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 || ||||| ||| | |||||||| | | ||| | ||||| || | | || | Sbjct 2454 TAC-AATCCCATTGCTGGTCCCGTTTGTTCCACCAATATAAGATCCCGTGGCACGGATGT 2512 Query 26190 CGT-GAGCATGAATACCGATTCCACCAGCCCATTTTGAAA---TAGCTGCACAATCTGAA 26245 | || | || ||| || ||||| || | || ||||| |||| | | | || Sbjct 2513 TATGGATGCTTAA-ACCAATACCACCTGCGCTTTGTGAAATTTTAGCGGTTTGTTTTAAA 2571 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 |||||| ||||||||| || || || | | ||| | |||||| || ||||| Sbjct 2572 ---GTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGGTCAGTAAAAAGCAGGAAGAC 2628 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCT 26365 | ||| | | || || ||| ||||||||| || || || ||||| ||| | | | Sbjct 2629 ATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGGTTGCATGCGTAAACCAGCGC 2688 Query 26366 TCACTCA 26372 ||||||| Sbjct 2689 TCACTCA 2695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253016025567050