Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq221 208 9e-49 seq2235 170 2e-37 seq1286 109 6e-19 >seq221 Length=17580 Score = 208 bits (230), Expect = 9e-49 Identities = 372/534 (70%), Gaps = 12/534 (2%) Strand=Plus/Minus Query 138164 TGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGG 138223 ||| | |||||| || |||| ||| ||||| | ||||| || ||||| |||||||| Sbjct 13970 TGGAGCGAGATGGGAGGCAACACAAATTGGACCCATTCCAGGGCCACCACCACCATGTGG 13911 Query 138224 AATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTT 138282 ||||||||| ||||| || | ||| |||||||| ||||| ||||| ||| |||| ||| Sbjct 13910 AATACAGAAAGTCTTGTGAAGATTGAGATGACAGACATCGGCACCGATA-TCACCTGGAC 13852 Query 138283 TTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGT 138342 || ||| || || ||||| | || |||||||| | ||| || |||||||| | | Sbjct 13851 GACATAAACCAACTTGAGCATTCATGTTGGCACCATCCATATAAACTTGACCACCGTATT 13792 Query 138343 CATGAA--CGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGG 138400 ||| | |||| |||| ||| | | || |||||| ||||||||||| ||||| Sbjct 13791 GATGGATGAGATCGCACATTTCTTTGGCACCTT--CTTCAAAGACACCATGAGTTGATGG 13734 Query 138401 ATATGTAATCATAATACATG--AGAGTTCAAATGTATTCATGATTGCTTTCTTCTC-TAG 138457 ||| |||||||| | | | || || |||||| | ||||| ||| | || Sbjct 13733 ATAGGTAATCATTAAAGCGGCAAGGGTATCTCTGTATT--TTTCGGCTTT-TTCACGGAG 13677 Query 138458 ATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGC 138517 |||||| || | || ||| |||||||| | ||| | || |||||||| || | Sbjct 13676 ATCTTTTTGATCAACATTTCCAAATTCATCACAATCGACGACAACTACTTTCATACCGAC 13617 Query 138518 CATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCT 138577 ||||||||||||||| ||||| || ||||| ||||| |||| |||| ||| | || ||| Sbjct 13616 CATGACTGCACTAGCTGGATTGGTACCATGAGCTGAAACTGGAATCAAACAAATATCTCT 13557 Query 138578 TTTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACC 138637 || | | ||| | |||| | ||| | ||| | | || || ||||| || || Sbjct 13556 TTGGTGTTGTCCAATTTCTTGGAGGTATTTTCTGATGACCATGAGACCAGCATATTCTCC 13497 Query 138638 CTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACA 138691 ||||| || || || ||||| | ||| | |||| || ||||| ||||| Sbjct 13496 TTGTGAACCGGCATTTGGTTGGAGTGAGCAATCGGCAAAGCCAGTGATTTCACA 13443 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139863 GCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTA 139922 || || || || |||||||||||||| || ||||| || ||||| ||| |||||| || Sbjct 12217 GCTTCGGCAGCAGCAGTTGCTTCATCCAAAAGAGAGGCATTTGCCATTTTTAATCCAGTC 12158 Query 139923 AGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCA 139982 | || | | | |||||| |||| || |||| |||||| | || |||| || || Sbjct 12157 ATATCGGAAACCATAGTTTGGAAATTCAACAAAGATTCCAAACGACCTTGAGCAATTTCT 12098 Query 139983 GCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTGTATG 140042 ||||| || |||||||| | |||||||| | |||||||| | || |||| || || Sbjct 12097 GCTTGGTATGGAGTGTATGGAGTGTACCATCCTGGATTCTCCAAAATATTTCTTTGGATT 12038 Query 140043 ACTGGGGGTGTAATGGTTCCATAGTATCC 140071 || | ||| ||||| |||||| || Sbjct 12037 ACAGCAGGTACGATGGTGTTATAGTAACC 12009 >seq2235 Length=10344 Score = 170 bits (188), Expect = 2e-37 Identities = 272/386 (70%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230 || |||||||| ||||| |||||||| | ||||||||| ||||| || |||||||| || Sbjct 7107 AGGTGTTTTGCAACACCGATAGGACCCATGCCAGGACCACCACCACCGTGTGGAATGCAA 7166 Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAG 138289 || || || || | || || ||||| || || ||||| ||| | | || | | || Sbjct 7167 AAAGTTTTGTGCAGGTTCAGGTGACAGACGTCAGCACCGATA-TGTCCGGGACTGGTTAA 7225 Query 138290 ACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC 138349 |||||| |||||||| | |||||||||||| | ||| ||||| || || || ||||| | Sbjct 7226 ACCTACTTGTGCATTCATATTTGCACCATCCATATAAACCTGTCCTCCGTTTTCATGGAT 7285 Query 138350 GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAAT 138409 ||| || || || | | ||| || ||| || |||||||| || || || || || | Sbjct 7286 GATGTTGCAGATGTCAATAATGCTTTCTTCGAACACACCATGGGTAGAAGGGTAAGTGAC 7345 Query 138410 CATAATACATGAGAGTTCAAATGTAT--TCATGATTGCTTTCTTCTCTAGATCTTTGATG 138467 ||| | ||| || || ||| | ||| || || ||||| | || || | | Sbjct 7346 CATTAAACAGGAAAGCTCATTTTTATGCTCCTG--GGCTTTAGCTTTAAGGTCCTCTACA 7403 Query 138468 TCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCA 138527 ||||| || || | ||| | | || || |||| ||||||||| ||||| ||||| Sbjct 7404 TCTATATTTCCGTTTTCAAGAGATTTAACGATCACAATTTTCATTCCGGCCATTGCTGCA 7463 Query 138528 CTAGCAGGATTAGTTCCATGTGCTGA 138553 ||| ||||| |||||||| || || Sbjct 7464 GAAGCCGGATTGGTTCCATGAGCAGA 7489 >seq1286 Length=49315 Score = 109 bits (120), Expect = 6e-19 Identities = 340/519 (66%), Gaps = 8/519 (2%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || || || ||||| || || || || || || ||||| ||||| ||||| ||||| || Sbjct 22810 ACGCCGATCGGACCAACACCCGGCCCGCCGCCGCCATGGGGAATGCAGAAGGTCTTGTGC 22869 Query 138243 AAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 | || | || || ||||| ||||| ||| || | || || || || ||| | || Sbjct 22870 AGGTTCATGTGGCAGACATCGGCACCGATA-TCGCCGGGACGGGCAAGCCCGACCAGCGC 22928 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361 ||| || || || ||||||| ||| ||||| || |||| | ||||| || | | || || Sbjct 22929 ATTCAGGTTGGCGCCATCGAAATAGACCTGGCCGCCATGCTGATGAATGACCGTGCAGAT 22988 Query 138362 CTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | ||| | | ||| || |||||||| ||||||||||| || ||||| | || Sbjct 22989 ATCCTTGACGCCTTCTTCGAACACACCATGGGTCGATGGATAGGTGATCATCAGTGCTGC 23048 Query 138422 GAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATC 138481 ||| | | | | | ||||| || || || | | || || | |||| | Sbjct 23049 GAGATTGGCACTGTGCTGGTCGGCTTTTGCCTTGAGGTCCTCAAGATCGATATCGCCAGC 23108 Query 138482 ATCATCACACTTGACAC--CTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 || || || || ||| | || || ||| || ||||| ||||| || ||||| Sbjct 23109 CTCTTCGCA--TGCCACGACCACTACCCGCATGCCCGCCATATGGGCACTGGCCGGATTG 23166 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCCTTG 138598 || ||||| || || || || || || || | || | | |||| || ||||| | Sbjct 23167 GTGCCATGCGCCGATTCCGGGATGAGGCAGATATCACGATGCGCATCGCCCCGATCC-AG 23225 Query 138599 ATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTG 138658 |||||| | || || | || || ||||| |||||||| || || || || || Sbjct 23226 ATGATAGCGGCGAATGGCCAGGAGACCGGCATATTCACCCTGGCTGCCGGCATTCGGCTG 23285 Query 138659 TAATGATATAGAATCAAAACCTGTGATATCACATAACCA 138697 | ||| | | |||||| || ||||| || | ||||| Sbjct 23286 CAGTGAAACTGCATCAAAGCCGGTGATCTCGGACAACCA 23324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578942135830480