Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq886 221 2e-52 seq1668 192 8e-44 seq1857 95.1 2e-14 seq385 93.3 6e-14 >seq886 Length=30124 Score = 221 bits (244), Expect = 2e-52 Identities = 540/810 (67%), Gaps = 14/810 (2%) Strand=Plus/Minus Query 47570 AAGTTTTAGGTTCCCAACCCAATTTTTTCTTTGCCTTAGAGGCATCACCTAATAAGGTCT 47629 || ||||| |||||| |||| ||| || || || | | |||||||||||| | Sbjct 24313 AACTTTTAA-TTCCCATTTTAATTGTTTTTTGGCTTTGGTTGGGTCACCTAATAAGAGAT 24255 Query 47630 CTACTTCAGCAGGACGGAAATATTTAGAGTCAATTCTGATAACCGTTTTACCA---TCAG 47686 | ||||||| |||||||| ||||| | || ||| | | | | ||||| | Sbjct 24254 CGACTTCAGTTGGACGGAAGTATTTTGGATCGATTTTAACTAAAATGTTACCGGTCTTTT 24195 Query 47687 AATCAATACCAACTTCATCAAGACCAGAACCTTCCCATCTAATATTCATATCAAAATAAG 47746 ||| ||| ||||||| | ||| |||| |||| | || || |||| | | || Sbjct 24194 CATCGTAACCTTCTTCATCCAAACCTTCACCTCTCCATTTGATGTTGATATTGATTTCAG 24135 Query 47747 GTGCAGATTCCTCAACAAACTGACGGACAGAATATTGATTTC--CTGTGGCAATAACAAA 47804 | || || ||||| | ||| || | || | |||| | |||||||| ||| | Sbjct 24134 CAAATGCTTTTTCGACAAATTCACGAACTGCATG--GGTTTCACCAGTGGCAATGACATA 24077 Query 47805 ATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATG 47864 ||||| || |||||||| | ||| | ||||||||| ||||| || ||| | || || Sbjct 24076 GTCATCGACTTGGTCTTGTTGTAACATGAGCCACATAGCTTCGACGTAGTCTTTAGCGTG 24017 Query 47865 TCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGA 47924 ||||| ||||| |||| | || || | || || |||| | || | Sbjct 24016 ACCCCAATCACGTTTAGCATTGATGTTACCCAAGTACAAGGTTTCTTTGTGTCCGAGGGC 23957 Query 47925 GATTGCTTTTAATGCT-CTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAG 47983 ||| | || | | || ||||| | |||||||||||| ||| | |||||||| Sbjct 23956 GATA-CGAGCAACGAAACGAGTGATCTTTCTGGTTACAAAAGTTGGACCTCTTCTTGGAG 23898 Query 47984 ATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCT 48043 |||| || ||||| | ||||| |||||||| |||||| || | |||||||| || Sbjct 23897 ATTCGTGGTTAAACAAGATACCGTTACAGGCACTCATTCCATAAGCCTCACGATAATTGA 23838 Query 48044 TTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTG 48103 || ||||| || || | |||| ||||| |||| || |||||||| ||||| || | Sbjct 23837 CAACAATCCAATAAGCAAATTGTTTGGCAACGGCATATGGTGAACGTGGGTAGAATGGAG 23778 Query 48104 TGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGAT 48163 ||||||||| |||||||| || | |||||||||||||||||| ||| || ||||| | Sbjct 23777 TGGTCTCTGATTGTGGAGTTTCACGAACCTTACCATAAAGTTCAGAGGTTGAAGCTTGGT 23718 Query 48164 AGATACGAACCCTATCTTCCATCTCAAGCAA--ACGGACTGCCTCAAGCACTCTCAGGGT 48221 ||| |||| | | ||| | || ||| ||| | || || | | | || Sbjct 23717 AGAACTTAACCTTCTTTTCAAGACCA--CAACTACGAATAGCATCTAAAATACGAAGACA 23660 Query 48222 GCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACT 48281 || | |||| | |||| || || | ||| ||||| || || || |||||| Sbjct 23659 TCCCAAACCATCGACATTGGCAGTGTATTCAGCCATATCAAATGATACTTTAACATGAGA 23600 Query 48282 CTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATT 48341 || || || ||||||||||| ||| ||| | || || ||||| | |||||||| Sbjct 23599 TTGAGCACCGAGATTATAAATTTCAGTTGGGTTAATCTTTGAAATAATACCAACTAAATT 23540 Query 48342 TGTAGAGTCTGTTAAGTCTCCATAATGCAA 48371 || || |||||||| ||||||||||| || Sbjct 23539 GGTTGAATCTGTTAAATCTCCATAATGTAA 23510 >seq1668 Length=40664 Score = 192 bits (212), Expect = 8e-44 Identities = 527/798 (66%), Gaps = 36/798 (5%) Strand=Plus/Plus Query 47755 TCCTCAACAAACTGACGGACAGAATATTGAT--TTCCTGTGGCAATAACAAAATCATCAG 47812 |||||| |||| | |||||||| || || | | ||||| ||||| ||||| || || | Sbjct 988 TCCTCA-CAAAATCACGGACAG--TAGTGGTAATCCCTGTTGCAATCACAAAGTCTTCTG 1044 Query 47813 GTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGT 47872 || ||| || ||||| || |||||||| || |||| ||||||| | ||||||||||||| Sbjct 1045 CTTTTTCCTGCTGAAGGATCAACCACATGGCTTCGATATAATCTTTAGCATGTCCCCAGT 1104 Query 47873 CACGAAGTGC--ATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGC 47930 |||| | || || ||| || |||| ||||||||| | || || | ||| Sbjct 1105 CACGCTGCGCTGAT-AAG-TTACCTAAATATAAACAATTCTGAAGTCCCAAGGCAATTTT 1162 Query 47931 TTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATG 47990 | ||| | ||||| || || || ||||||||||| || | | || |||||| Sbjct 1163 CGCTGCTGCACGGGTAATTTTTCGGGTCACAAAAGTTTCTCCTCTTAAAGGGCTTTCATG 1222 Query 47991 ATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTTACT 48048 ||| || | ||| ||| |||| || ||||| || | ||||||||| || | || Sbjct 1223 ATTGAATAAAATCCCATTACAAGCGTACATGTTATAAGCTTCACGATAATTTACCGTA-- 1280 Query 48049 ATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTC 48108 |||||||| |||| | ||| || || |||||||||| | ||||| || || || || Sbjct 1281 ATCCAGTAGGCATACATTTTGGCCACTGCATAAGGAGACCTGGGATAAAACGGCGTCGTT 1340 Query 48109 TCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATA 48168 || | || ||| | | |||||| |||||| | |||| || || || ||||| || Sbjct 1341 TCACTTTGGGGAACCGCCTGCACCAAACCATACAATTCAGAAGTAGAGGCCTGATATATT 1400 Query 48169 CGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATG 48228 | | | ||||| | | | || | || || || | || | || || || Sbjct 1401 CTGGTTTTTTTCTCCATACCCAAAATCCGTATGGCTTCCAGGAGCCTTAATGTCCCGATA 1460 Query 48229 GCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCC 48288 |||| | | | ||||| || ||||| || || || | ||||| ||| || Sbjct 1461 CCATCCGCATTCGCCGTATATTCCGGCATTTCGAAACTCACATGAACATGGCTCATGGCT 1520 Query 48289 CCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAG 48348 | || |||||||| || ||||| || | || |||| | | ||| || ||||| Sbjct 1521 GCCAGGTTATAAATTTCGTCTGGCTGGGTTTCTTGTATAATGCGGATTAAGTTGGTAGAA 1580 Query 48349 TCTGTTAAGTCTCCATAATGCA----------------ATTTTAAT--TGATC---ATAA 48387 || || | || ||| |||||| ||||| || || || ||| Sbjct 1581 TCGGTCAGATCCCCAAAATGCAGTTTAAAATTCACGCCATTTTCATGCTGGTCCTGATAC 1640 Query 48388 ATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCA 48447 | |||||||| | || |||||||| ||||||| || | | |||||||| | Sbjct 1641 AAATGATCAATACGATCTGTATTAAACAAAGAAGATCGTCTTTTTAGTCCATGAACAAAA 1700 Query 48448 TA-CCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGT 48506 || || ||||||| ||||| |||||| | || | |||||| || || || | || || Sbjct 1701 TATCCTTTTTTCAATAAGAA-TTCTGCAAGATAGGCACCATCCTGACCCGTTACCCCTGT 1759 Query 48507 GATTAAAGCAACTTTCAT 48524 ||||||||| || ||||| Sbjct 1760 GATTAAAGCTACCTTCAT 1777 >seq1857 Length=1661 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| |||| | ||||| |||||||||||| ||| | Sbjct 717 TGGAGAATAACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 776 Query 53800 TGAGCTAATTCCCC 53813 ||||||||| |||| Sbjct 777 TGAGCTAATCCCCC 790 >seq385 Length=624889 Score = 93.3 bits (102), Expect = 6e-14 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGG-AGGCTTTCACCT-CGCTGGTTTTCAAGACCA 53541 |||||| ||||| ||||||||| ||||| ||||| |||||| ||| ||||||||||||| Sbjct 106401 GCGGAGGGGGTGGGATTCGAACCCACGGTAGGCTCTCACCTACGCCGGTTTTCAAGACCG 106342 Query 53542 GAGCCATAAACCACTCGACCACCTCTCC 53569 | ||| |||||| |||| ||||| |||| Sbjct 106341 GTGCCTTAAACCGCTCGGCCACCCCTCC 106314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665429730581680