Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq332 188 9e-43 seq886 141 1e-28 seq82 93.3 5e-14 >seq332 Length=17232 Score = 188 bits (208), Expect = 9e-43 Identities = 559/848 (66%), Gaps = 18/848 (2%) Strand=Plus/Plus Query 76094 TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 |||||| || || || | ||||||||| || || ||||||| ||||| ||| || Sbjct 5354 TTTGATCATCAACAATTATTTGAAATCACTAAAATCATTACCAAGAATCTCAACAAGATC 5413 Query 76154 ATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 || || ||||||| || |||||| ||| || || | ||| | |||| ||||| Sbjct 5414 ATCGATAGAAATTACTACCCCGTTCCAGAA-GCCAAAACGAGTAACCTCAGACATAGACC 5472 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCG-CTACGCATTTG 76271 |||||| | || |||||||| | || |||||||| | | | || || | |||| | Sbjct 5473 AATTGGTATTGGAATTCAAGGTTTAGCTGATGTATTCTTATCATTACGTCTTC-CATTCG 5531 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 |||||| | || | ||| | || |||||||| || || ||| Sbjct 5532 ATTCAGCAGGTGCTTCTATTGTAAATCGTGAGATTGCCGAAACCATTTACTTTGCTGCCC 5591 Query 76332 TGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391 | || || ||||||||| | ||| | ||||| || |||| || | || Sbjct 5592 TCACTGCTTCCGCAGAGTTGGCTGAAAAAGATGGTCCTTATGAAACTTTTGCAGGATGTC 5651 Query 76392 CCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG 76451 | || ||| |||| | || || | ||||||||||| | ||| ||||||| || | | Sbjct 5652 CAGCTTCCAAAGGTATTCTCCAATATGATATGTGGGGTG-TGACACCAAGCCCACGTTGG 5710 Query 76452 ACTGGGATGTT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 76510 | ||| | ||||| || ||| | | ||| | | || ||| | | || Sbjct 5711 GATTGGACTTCACTCAAACAAAAGATCCAAACCACCGGTTTAAGAAATAGTTTACTCATT 5770 Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 |||||||||||||| |||||||| |||||||| | || ||||||||||| || |||||| Sbjct 5771 GCACCAATGCCAACTGCCTCCACATCACAAATCCTCGGAAATAATGAATGTTTCGAACCA 5830 Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630 || ||| | || ||||| | | ||||| ||||| ||| ||||||||| || Sbjct 5831 TATACATCCAATATCTATTCTCGTCGTGTTCTCGCCGGTGAATTTACCATTGTCAATAAA 5890 Query 76631 CACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATG 76690 || | || | || |||| | | ||||||||| | ||| || || || | || Sbjct 5891 CAATTACTCCAAGATCTCATCGAATTGGGTCTCTGGACTCCGGAAATTAAAAATATGATC 5950 Query 76691 GTGAAAGC---GGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATG-ATATCAAGAA 76746 || ||| ||||||||| |||||||||| ||| | |||| || | |||| || || Sbjct 5951 GT---AGCCAATGGTGGTTCCGTTCAAAATATTCCAGGTCTCCCCGAAGAATATAAACAA 6007 Query 76747 TCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGAT--GTCATTGACATGGCCGCAGAT 76804 ||||| || || |||||||| | || | | |||| || ||||| || || Sbjct 6008 -CTCTATAAAACCGTTTGGGAAAT--TCGTCAACGTTCCCTCATCGATATGGCTGCTGAA 6064 Query 76805 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATG 76864 | ||| ||||| ||||||||||||||| | ||| | ||||| | || | | Sbjct 6065 AGAGGTGCATTCATAGATCAAAGTCAAAGTTTTAATGTTTTCATTGCTGAACCTTCACTT 6124 Query 76865 TCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTAC 76924 | || | |||| |||||| | || || |||||| | || | |||||||| |||||| Sbjct 6125 GCTAAATTAACTTCAATGCATTTCTATGCCTGGAAAAAAGGATTGAAAACCGGTATGTAC 6184 Query 76925 TATCTCCG 76932 ||||| || Sbjct 6185 TATCTTCG 6192 >seq886 Length=30124 Score = 141 bits (156), Expect = 1e-28 Identities = 281/411 (68%), Gaps = 4/411 (1%) Strand=Plus/Minus Query 177557 TTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCT 177616 |||| ||||| | | || | || || || || || || | ||||| ||||| | | Sbjct 24125 TTTCGACAAATTCACGAACTGCATGGGTTTCACCAGTGGCAATGACATAGTCATCGACTT 24066 Query 177617 CTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTC 177676 |||||||| | |||||||||||| ||||| || ||||| || || |||||||| || | Sbjct 24065 GGTCTTGTTGTAACATGAGCCACATAGCTTCGACGTAGTCTTTAGCGTGACCCCAATCAC 24006 Query 177677 TGGCAGCGTTGAGGTTACCGA-GTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTG 177735 ||| |||| |||||| | || ||||| ||| | | || | || | Sbjct 24005 GTTTAGCATTGATGTTACCCAAGTACAAGGTT-TCTTTGTGTCCGAGGGCGATACGAGCA 23947 Query 177736 ACGCCATCAGTAATCTTCTTTGTGACAAA-GTCGGCACCTCGTCTCGGTGATTCGTGGTT 177794 ||| | ||| ||||| | || ||||| || || ||||| ||| || ||||||||||| Sbjct 23946 ACGAAACGAGTGATCTTTCTGGTTACAAAAGTTGG-ACCTCTTCTTGGAGATTCGTGGTT 23888 Query 177795 GAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCA 177854 || | ||| ||| |||||| ||| ||||| | || || ||||| || | ||| Sbjct 23887 AAACAAGATACCGTTACAGGCACTCATTCCATAAGCCTCACGATAATTGACAACAATCCA 23828 Query 177855 GTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGT 177914 | ||| ||||| ||| |||| || ||||||||||| || || ||| | Sbjct 23827 ATAAGCAAATTGTTTGGCAACGGCATATGGTGAACGTGGGTAGAATGGAGTGGTCTCTGA 23768 Query 177915 TTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 |||||||||||| || || |||||| | | || || ||||| |||||||| Sbjct 23767 TTGTGGAGTTTCACGAACCTTACCATAAAGTTCAGAGGTTGAAGCTTGGTA 23717 >seq82 Length=463168 Score = 93.3 bits (102), Expect = 5e-14 Identities = 265/403 (66%), Gaps = 16/403 (4%) Strand=Plus/Plus Query 175285 ATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGA 175344 || || || |||| || |||| ||| || ||||| || ||||| || || || || Sbjct 444789 ATTCCGCGCGGCGTGCTGCTCGTCGGTCCTCCCGGTACCGGTAAGACGCTTCTGGCGCGC 444848 Query 175345 GCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAG 175404 |||||||| |||||| | ||||| || ||| || ||| | | |||| || || Sbjct 444849 GCCATCGCCGGTGAAGCCAATGTGCCGTTCTTCACCATCTCCGGTTCCGACTTCGTTGAA 444908 Query 175405 ATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA--- 175461 ||||| || ||||| ||||| | || || || | || ||| | ||||| Sbjct 444909 ATGTTCGTCGGTGTCGGTGCATCGCGTGTGCGTGACATGTTCGAA----CAGGCGAAGAA 444964 Query 175462 -AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGC 175520 ||| ||| || || ||||||| || || || |||||||| ||| || ||| |||| Sbjct 444965 GAATGCACCCTGCATCATCTTCATCGACGAAATCGATGCGGTCGGCCGTCATCGCGGCGC 445024 Query 175521 TGGTG-GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGA 175579 ||| | | | |||| |||||| | ||||| || | || || || || ||||| Sbjct 445025 CGGTCTGGGCGGCGGCAA-TGACGAACGCGAACAGACGCTGAACCAGCTGCTGGTCGAGA 445083 Query 175580 TGGATGGCTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGG 175636 ||||||| || || |||||| ||| | | | || || || || || || | Sbjct 445084 TGGATGGTTTCGAGGCCAATGA---AGGCGTCATCCTGATCGCTGCGACCAACCGTCCCG 445140 Query 175637 ATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | || ||| ||| | || || ||||| |||||||| || Sbjct 445141 ATGTTCTCGATCCGGCCTTGCTGCGTCCGGGCCGTTTTGACCG 445183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596511628349120