Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1857 89.7 6e-13 seq2022 86.0 7e-12 seq1412 84.2 2e-11 >seq1857 Length=1661 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 790 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 731 Query 18068 TCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 730 TCCGTTATTCTCCA 717 >seq2022 Length=5126 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 |||| |||||||||| ||| |||||||| ||| | ||| ||| || ||||||||||||| Sbjct 4308 GGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCAGCGGTTCGAC 4249 Query 18068 TCCGCTATTCTCCA 18081 |||||||||||||| Sbjct 4248 TCCGCTATTCTCCA 4235 >seq1412 Length=10105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 161245 GTAGCTCAGC-GGATAGAGCAACCGCCTTCTAAGCGGTTGGTCGCAGGTTCAAATCCTGC 161303 |||||||||| |||||||||| ||||||||||||||| ||||||||||||| | |||||| Sbjct 1897 GTAGCTCAGCTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCGCAGGTTCGAGTCCTGC 1838 Query 161304 C 161304 | Sbjct 1837 C 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561193460725600